FMO04653.5prime Sequence
1212 bp (922 high quality bases) assembled on 2008-08-08
> FMO04653.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGCGTCAG
TAAGAAATACAGTCACTAGCCAAGAAAATGGGAGTATCTTTAAACGGTCC
AGTAACTTAGACAACGAACTCAAAAAGAAGTCCGTGGTGGTTAATCAGAC
ACAAGCCGAAGAGTCTAAGGCTAATAAGAAAGATACTACGCACTATTACA
GTGTGGAAACACTTGCCGACCTGCAGTATCGATCTCAGATAAAGGTTTTG
GAAAAGATCTATGGCGAGGAGGTTGATATGACACCTAAGTCGATCCAAGA
TGACACCTATGTGGAGCAGTTCATGAAGTACAACCTAAATGTCATGCACC
AAATGACTAACTTCACTACAATGGTAGCGAAGAGCACGACCAGATCCCGC
ACGCGGTCTAGTGTTCGGGCCGGAATAGGCGGCAATAAGCAGTCCATTGA
CGACCTGATGAACGGGATACTTTATGAAACTATTAACTGGGAACCGTACA
GCACTGTTGAGGCTCTCGAAGAGGCGTACGAGCCAAAGCCGTATACCAAG
TCCTTTTTAAAGATCACCTTACGCAAGTCTGACTTCTTCGAAATTCACAG
CCAGACGCAGACGACGGTGGCCAAGGGATCGCCCGAGGGCGACGATGCGG
AGCGAGACAACCGAAACTACGAGTATCTGACAATAGGGAAAGGCAAAATT
CGCCGGCGCTCAGACAATGACGCTCAGACAGATACTCTGCTCTTCACCAC
TCGGGCAGTCAACACCATCCTCATAACCAAGGCCACCGTCAGCTCTTACG
TTTCCAACTTTGAGATGTACGACACGCTGAACAATATCACCAATGAGTTC
GCAACAGCCACTATGAGTTCGGTAAAGGACCTGACCTCGGCTCTAGCGCA
GACGGAGGATGCGGATACCTTTGAGACGACGAGGCCGTTGCCGAAAAGAC
AGTCAACATCAGATAGAGCGCCTGTTCCGGAGCCCGAGTTCGCACGCATC
ATGTACATGGGACCGCACGCTCTGAGCACACTAACGAGGCGGGTTACGAC
GCTTCGTTAACTTTGGACGAGGTGAACGCTGAAGACGAAGCGATTACGTC
TACTGATGACTTGCTCTTTCGCTGTACGGATCACAAGACCAGGCTAGCCT
AACTAATGATTCTGCTGCACATGGTGTCATTCAGACTGTGAACTACGGAC
AGTACCACTTTA
FMO04653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RA | 2616 | CG7051-RA | 192..1292 | 37..1121 | 4855 | 97.1 | Plus |
| Dic61B-RB | 2642 | CG7051-RB | 276..1318 | 95..1121 | 4565 | 96.9 | Plus |
| Dic61B-RB | 2642 | CG7051-RB | 192..249 | 37..94 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 151267..151791 | 985..466 | 2365 | 98.5 | Minus |
| 3L | 28110227 | 3L | 151848..152071 | 466..243 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 152121..152272 | 246..95 | 745 | 99.3 | Minus |
| 3L | 28110227 | 3L | 152341..152398 | 94..37 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:06 has no hits.
FMO04653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:10 Download gff for
FMO04653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 189..1309 | 31..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:13 Download gff for
FMO04653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 189..1309 | 31..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:29 Download gff for
FMO04653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 189..1309 | 31..1135 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:29 Download gff for
FMO04653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 152341..152401 | 31..94 | 95 | | Minus |
| 3L | 151103..151790 | 467..1135 | 94 | <- | Minus |
| 3L | 151848..152069 | 245..466 | 100 | <- | Minus |
| 3L | 152123..152272 | 95..244 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:10 Download gff for
FMO04653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 151103..151790 | 467..1135 | 94 | <- | Minus |
| arm_3L | 151848..152069 | 245..466 | 100 | <- | Minus |
| arm_3L | 152123..152272 | 95..244 | 99 | <- | Minus |
| arm_3L | 152341..152401 | 31..94 | 95 | | Minus |
