FMO04654.5prime Sequence
496 bp (496 high quality bases) assembled on 2008-08-08
> FMO04654.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGACTACT
TCGAGGAACTGGGTCATGAACCCACTGGACCACTGGGCGCAAACGATTTG
GCCAGAAATCTAAAGCGCCTTCAGGTTTTGGCCATCATGAATGGCATCGA
TATGGAGATCGAGGTGCCAGAGGCCTCCAAGCGAGCCATTCTGGAGCTAC
CAGTTCATGAAATCGTCAAATCGGACGAGGGCGGCGATTTGGAGTGCTCT
GTGTGCAAGGAGCCAGCTGAAGAGGGCCAGAAGTACAGGATCCTTCCATG
CAAGCACGAGTTCCACGAGGAGTGCATCCTGCTCTGGCTGAAGAAGACGA
ATTCCTGTCCTCTGTGTCGCTATGAACTGGAAACTGATGATCCTGTTTAC
GAGGAGTTGCGCAGGTTTAGGCAGGATGAAGCTAACCGACGGGAGCGGGA
GAACACTCTTTTGGATTCCATGTTCGGCGCAAGCTTTCTAGACCAT
FMO04654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7694-RC | 631 | CG7694-RC | 116..557 | 37..478 | 2210 | 100 | Plus |
| CG7694-RB | 640 | CG7694-RB | 125..566 | 37..478 | 2210 | 100 | Plus |
| CG7694-RA | 970 | CG7694-RA | 455..896 | 37..478 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18590118..18590427 | 37..346 | 1550 | 100 | Plus |
| 3R | 32079331 | 3R | 18590519..18590652 | 345..478 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:21 has no hits.
FMO04654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:24 Download gff for
FMO04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7694-RA | 451..898 | 37..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:57 Download gff for
FMO04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7694-RA | 451..898 | 37..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:35 Download gff for
FMO04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7694-RA | 455..902 | 37..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:35 Download gff for
FMO04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18590109..18590427 | 23..346 | 98 | -> | Plus |
| 3R | 18590521..18590658 | 347..486 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:24 Download gff for
FMO04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14415831..14416149 | 23..346 | 98 | -> | Plus |
| arm_3R | 14416243..14416380 | 347..486 | 97 | | Plus |
