FMO04655.5prime Sequence
575 bp (575 high quality bases) assembled on 2008-08-08
> FMO04655.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAACCTTT
CACTCCCTACTATTCGCCCTGATTTTGGCCCTCGTGAGCCTGGACCCCTC
TTCCGGTTACTCCCGCCGGAAAGATGAGCGTATAATTAGAGAATATAAGC
GAGAGCAAGAGTTAAATCACGCCAAGATCGCCAGAGATTTGGTCCATCGC
GCCAATTGGGCGGCTGTGGGAAGTCTCTCCACCAACGAACGGGTGAAGGG
GTATCCCATGGTCAACATTATCTCCATCGACGACAGCGATGCTAATAACA
GGTCCACTGGACGTATTCGATTCCTGCTAACCGATTTGGACTTCACTGGT
CCCGACTGGCAGAAGGACAACAAGGTCACACTCCTGTTCAGTGACGAGCA
GACCCTAAGATGCAAGGAGGGCGGAAAGGATCCCATGGAGCCTACATGTG
CCCGTTCCATGATCAGTGGACAGGTGAAGAAGCTCACAATTTCTACCTTT
GCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTATGGAGGTCCT
CATAAAGGCAAGCTTTCTAGACCAT
FMO04655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CREG-RC | 823 | CG5413-RC | 50..569 | 38..557 | 2600 | 100 | Plus |
| CREG-RD | 962 | CG5413-RD | 107..551 | 38..482 | 2225 | 100 | Plus |
| CREG-RB | 967 | CG5413-RB | 112..556 | 38..482 | 2225 | 100 | Plus |
| CREG-RD | 962 | CG5413-RD | 631..708 | 480..557 | 390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17393816..17394260 | 482..38 | 2225 | 100 | Minus |
| 3R | 32079331 | 3R | 17393526..17393602 | 557..481 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:16 has no hits.
FMO04655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:20 Download gff for
FMO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RC | 38..574 | 27..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:29 Download gff for
FMO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RC | 11..547 | 27..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:29 Download gff for
FMO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RC | 38..574 | 27..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:29 Download gff for
FMO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17393521..17393600 | 483..563 | 96 | <- | Minus |
| 3R | 17393816..17394272 | 27..482 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:20 Download gff for
FMO04655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13219243..13219322 | 483..563 | 96 | <- | Minus |
| arm_3R | 13219538..13219994 | 27..482 | 98 | | Minus |
