FMO04656.5prime Sequence
944 bp (944 high quality bases) assembled on 2008-08-08
> FMO04656.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCCCAGTCGC
GGTGTCCTTTTCTACGGACCCCCTGGTTGCGGTAAGACGCTGCTGGCCAA
GGCCATTGCCAACGAGTGCCAGGCGAACTTCATCTCAGTCAAGGGTCCCG
AACTGCTGACCATGTGGTTCGGCGAGTCTGAGGCCAACGTGCGCGACATC
TTCGATAAGGCCCGCTCGGCGGCTCCTTGTGTGCTCTTCTTCGACGAGCT
GGACTCGATCGCCAAAGCCCGTGGCGGTAATGTCGGCGATGCTGGCGGCG
CCGCTGATCGTGTGATCAATCAGATCCTTACCGAAATGGATGGCATGGGA
GCCAAGAAGAATGTGTTCATCATCGGAGCCACCAATCGCCCGGACATTAT
CGATCCGGCCATCCTCCGTCCGGGCCGTCTGGATCAGTTGATCTATATTC
CGCTGCCCGACGACAAATCGCGTGAGGCTATCCTGAAGGCTAACTTGCGC
AAGTCGCCGCTGGCCAAGGAAGTAGACCTTACCTACATCGCCAAGGTGAC
GCAGGGCTTCTCTGGCGCCGATCTGACCGAGATCTGCCAGCGGGCTTGCA
AGCTGGCCATCCGACAGGCCATCGAGGCTGAAATTCGTCGCGAGAAGGAG
CGCGCCGAAAATCAGAACTCCGCGATGGACATGGACGAGGACGATCCAGT
GCCGGAGATTACTAGCGCCCACTTCGAGGAGGCCATGAAGTTCGCTCGCC
GTTCGGTGTCCGATAATGACATCAGGAAGTACGAGATGTTTGCCCAGACT
TTGCAGCAGTCCCGTGGATTCGGACAGAACTTCAGATTCCCCGGTCAAAC
CGGCAACACCTCATGATCTGGTAACAACTTGCCAGTTAACTCGCCCGGCG
ACAACGGCGACGATGATCTTTACAGTGCAAGCTTTCTAGACCAT
FMO04656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RD | 3125 | CG2331-RD | 1749..2640 | 35..926 | 4445 | 99.9 | Plus |
| TER94-RC | 3058 | CG2331-RC | 1682..2573 | 35..926 | 4445 | 99.9 | Plus |
| TER94-RA | 3016 | CG2331-RA | 1640..2531 | 35..926 | 4445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9992051..9992696 | 35..680 | 3230 | 100 | Plus |
| 2R | 25286936 | 2R | 9992763..9992917 | 681..835 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 9992981..9993074 | 833..926 | 455 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:54 has no hits.
FMO04656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:53 Download gff for
FMO04656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1640..2542 | 35..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:59 Download gff for
FMO04656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RC | 1587..2489 | 35..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:02 Download gff for
FMO04656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1640..2542 | 35..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:02 Download gff for
FMO04656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9992051..9992696 | 35..680 | 100 | -> | Plus |
| 2R | 9992763..9992917 | 681..835 | 100 | -> | Plus |
| 2R | 9992984..9993085 | 836..939 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:53 Download gff for
FMO04656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5880268..5880422 | 681..835 | 100 | -> | Plus |
| arm_2R | 5880489..5880590 | 836..939 | 95 | | Plus |
| arm_2R | 5879556..5880201 | 35..680 | 100 | -> | Plus |
