FMO04658.5prime Sequence
1225 bp (1056 high quality bases) assembled on 2008-08-08
> FMO04658.5prime
CGTATAGCATACATTAAACGAAGTTATCAGTCGACATGAAGACAGGCACT
CGAATGGACGCTTTCCACACGGCGCTGCACTTAATCACAATCGCAGCTCT
GACGACGCACGCGGCGCAGATTCCAACGGCAATGAAAGATGCCCAGAGCT
CGCTGAGCGATGCGATTGCGGCGGCGGAGGCGGAGGTGGCCTCCACCTCT
AAGCCGGCGGTGGAGCCGAGTGTGCGGATCAAGTGCCTCTCCGGATCGAT
GCTGATCACCATTAAAGACGCTCCTCCGAACCACGAAACGGGCCTGTTCA
GCGGCATGATCTACCCGAAAGGCCTGTCCAAGAACTCCACCTGCTTGAGC
GAGTACAGAGATCATGTGGGCTCCCTGCGATATAAGCTGCCCCTGAGATC
TTGCAACACGATGCCGAAGGAAACGGATGACGGTGGCATTGAGTTCTTCA
ACACCATCGTGCTGCAGCCCCACCTAAAGCTCATCACGGACCTGGGACGT
GGCTACCACGTCCGCTGTGCGTACAAGAGTCGGGACGCAGCCATGAAGCC
CAAAAAGTACCTGCGCAAGCACGCCCAGAAGCCACAGGCCTTCCGCAGCG
ATGATCGGCGGGAGTACGGACGATCGCTGGACAAGCAGCAGGACGACGAC
CTGGACGAGGAGGATGTCTACGATGCGAATGCCCCGACGCAGGAGGAGGA
CGTGACCAACAACGAGATCCCCATGCCAGGCTGCCACATGAAGATCTACA
ACGACGAGCACAAAATTGCCGACGATGTGAAGATCGGTGATCCTCTGACC
ATTGTCATCAGCATCGATAAGCAGAAGGTTTACGGACTCCATGTCACGGA
CTGCATAGTTCGCGATGGTCTGGGCTGGGGAGAGCAGCGACTGGTGGGCG
AAGATGGCTGCCCCATGGACAACGAGATCATGGGTCAGTTCAACTACACC
CAAGACCGATTGCAGCCAACGTGACCTTTCCGGCGCACAGTTCCCTACAC
CACCTCCGTGTACTACCAGTGCAACGTGCGACTGTGCGCCTTGAGACCCC
ACCTGCCAGAGCTCCCAGTGCAGCGGCAGAGCCCAAGCGCCCAGCCGCCG
CGAAGCAGAGAGACGGTCTGCCCCGCACATGAGGCTTCTCTGCTATATTG
GAAATGAACGAAAGCACGACTGCACAGGACTCGGGTTACAAGGGAAGAAC
TCTGGGAACACGACCCCGTGTGTGC
FMO04658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pio-RE | 2374 | CG3541-RE | 88..1286 | 35..1205 | 5125 | 96.6 | Plus |
| pio-RD | 3128 | CG3541-RD | 842..2040 | 35..1205 | 5125 | 96.6 | Plus |
| pio-RB | 2656 | CG3541-RB | 370..1568 | 35..1205 | 5125 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24595857..24596339 | 425..907 | 2415 | 100 | Plus |
| 2R | 25286936 | 2R | 24591952..24592174 | 136..358 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 24596395..24596552 | 907..1059 | 550 | 94.3 | Plus |
| 2R | 25286936 | 2R | 24592230..24592300 | 356..426 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 24588754..24588805 | 35..86 | 260 | 100 | Plus |
| 2R | 25286936 | 2R | 24589377..24589425 | 87..135 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:06 has no hits.
FMO04658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:26 Download gff for
FMO04658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pio-RB | 364..1496 | 31..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:08 Download gff for
FMO04658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pio-RB | 337..1469 | 31..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:29 Download gff for
FMO04658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pio-RB | 364..1496 | 31..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:29 Download gff for
FMO04658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24592233..24592299 | 359..425 | 100 | -> | Plus |
| 2R | 24588741..24588805 | 24..86 | 92 | -> | Plus |
| 2R | 24589377..24589425 | 87..135 | 100 | -> | Plus |
| 2R | 24591952..24592174 | 136..358 | 100 | -> | Plus |
| 2R | 24595858..24596339 | 426..907 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:26 Download gff for
FMO04658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20476264..20476328 | 24..86 | 92 | -> | Plus |
| arm_2R | 20476900..20476948 | 87..135 | 100 | -> | Plus |
| arm_2R | 20479475..20479697 | 136..358 | 100 | -> | Plus |
| arm_2R | 20479756..20479822 | 359..425 | 100 | -> | Plus |
| arm_2R | 20483381..20483862 | 426..907 | 100 | -> | Plus |
