FMO04659.5prime Sequence
1212 bp (1019 high quality bases) assembled on 2008-08-08
> FMO04659.5prime
ACTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGTCCAACAC
GGAGAAAGGAGGTCTGCAAAGAGTGCGAAACTTTCTGTCATGCCGCCAAG
TTCTGAACCTGCTGACCATGCTCGGCTTCATGCTGAACTACGCCCTGCGA
GTGAACCTCACCATTGCCATCGTGGACATGGTCCGACCCAATGTCACATC
AGCGGTGAATGCCACTCTAGTGGGGAATAGTACGGCGGCCAATAGCACCG
CATCGCCTGATGGAGTGGATGTGTACGAGGAGCGCTTTCCCTGGGACAGC
TACCAGACCAACTTCGTGCTGGGCTGCTTCTTCTGGGGCTACATCCTCAC
CGAACTGCCGGGCGGTCGTCTTGCCGAGCTGATCGGTGGACGCCGCGTCT
TTGGACATTCCATGCTGTGGGCCAGTCTGCTCACCCTGATCACGCCGCTG
GCGGCGCATATCAACTACGTGGTGCTCATCGTGGTGCGAGTTGTTCTTGG
CTTCATGCTGGGCGCATCCTGGCCAGCCATTCACCCGGTGGCCGCTGTCT
GGATTCCGCCCATGGAGCGCTCCAAGTTTATGTCCAACATGATGGCTTCT
TCGCTTGGTGCTGCAATCACCATGCCCATCTGCGGCTACCTGATCTCCGT
CGCTGGCTGGGCCAGTGTTTTCTATTTGACGGGAGCCGTGGGTCTGCTGT
GGTCCTTGGCCTGGTTCACTTTTGTCTATGAGACACCCGCCACTCATCCC
AGGATTTCAGCCGAGGAGCGGCGGGAGATTGAGGAGGCCATTGGCACCAC
TACCTCTAAGAAGCGTCCGAGCCATGTGCCCTGGGGTCAGCTGCTCTGCT
CTCCAGCTGTGTGGGCAATCATCATCTGTCACGGACTGGCCGTCTTTGGA
TTCTTCACTGTGGTCATCAGTTGCCCACTTTCATGTCCAGATTCTGCACT
TCGATATCAAACAGATGGTTTGTCTCGTCGCTGCCTTATCTGATAATACG
TTATGCCTGTGCTTCATCCTACTGACTGATACTGCGCAGAAGGTACTTTG
ACACGACGGCCACAGAACTATCACTACTTGCTCTTGGAATTCCGGCCTTG
ATGTTGCAAGGTTTTGGCCACAATGCCCTGACCTGTACGAACTTCCCGTG
CAGTGCCATGGCATCACGTGTTATCGGCAATGCCATGTAATGACCGGAAC
CTTGGGAGAGAC
FMO04659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3036-RB | 2300 | CG3036-RB | 513..1586 | 39..1093 | 4840 | 97.8 | Plus |
| CG3036-RA | 2731 | CG3036-RA | 513..1586 | 39..1093 | 4840 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4901402..4901917 | 80..595 | 2580 | 100 | Plus |
| 2L | 23513712 | 2L | 4902024..4902399 | 595..968 | 1765 | 99.2 | Plus |
| 2L | 23513712 | 2L | 4893954..4893994 | 39..79 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:10 has no hits.
FMO04659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:07 Download gff for
FMO04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3036-RA | 503..1570 | 28..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:27 Download gff for
FMO04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3036-RA | 500..1567 | 28..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:28 Download gff for
FMO04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3036-RA | 503..1570 | 28..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:28 Download gff for
FMO04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4893944..4893994 | 28..79 | 92 | -> | Plus |
| 2L | 4901402..4901917 | 80..595 | 100 | -> | Plus |
| 2L | 4902025..4902395 | 596..964 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:07 Download gff for
FMO04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4893944..4893994 | 28..79 | 92 | -> | Plus |
| arm_2L | 4901402..4901917 | 80..595 | 100 | -> | Plus |
| arm_2L | 4902025..4902395 | 596..964 | 99 | -> | Plus |
