FMO04661.5prime Sequence
1227 bp (1057 high quality bases) assembled on 2008-08-08
> FMO04661.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAATCGC
TCCAGCCAGCGGGACCGAGAGTTCAATCGTGATAATACTTACAATAACAA
TCGCGACAATCGAGACCATAATCGGGACAATCGCGATAATCGGGAGAATC
GCAGTAATTTCCAAAACTATCGCAATCGTGACAGGGATCGCGATAGGCAG
CGTCAGGTGCCCACGGAACCTCCGTTCATCGCTTATGTGGGCAACCTTCC
CAAGGGTCTCGTCCAGGGCGATGTGATGAAGATATTTTCGGACTTCGAGG
TGAAGAATGTGCGCCTGATCAAGGACCGTGAGACGGATGAATTCAAAGGC
TATGGCTACGTAGAGTTCGAGACTCTGGCACAACTGAAGAGTGCTCTCAA
CTGCAACGGACGCATCAAGCTAGACAACTTTTCGGCCCCCCTGCGTATCG
ATATAGCCGACCATCGCCGGCAGAACCCGGGTGCTCCCAGCGGTGTTGGC
GGAGCTCCTCCAGCCGGAGTGGGCCACGAAAGAGGTGGTGGCGTCGGAAG
AGGAGGCAGCACGGGTGCAGCAAACGGTAACAATCCCTACTACCAGAGGC
GCAACTATCGGCGGGACGACAGTGTGGGATCCCATCAGTTTAGAAGGAGG
GAACCGCGCAGCAACAGCAGCAACCACCAAATGTCCAATAGCAGCCCCAC
ACAAAGCACCACGTCCATTAATTACAACCGCACCACTCGAGGTGGTTTCA
ATAGCCGTGTTGCTGTAGGTGGAAATGGCAATCGTTACCAAGGAGGAGCT
CCACGTAACTTCAATGACCGCGAGGATCAGCAATCGACCGGCAGCGGAGG
ATTCCAACGCAATCGCACCTACAACTTTAACCGATCCATGAACAACAGCG
TCAGCGGAGGAGGTGCTGGAGTAGTAGGGGCGGGCATCCGCAGCGGAACT
TCAATGAAATGGAGCGGCGGTGGATTCGGGGTCGTAAATGAGCGCACTAT
ACCATTTTGTGCAGATCGCAATCGCGATCGCCGTGGACACTACATCAAAT
CACTCTGGAGTCTGCGCTACAATAACATGGAACACACCTTTGCCGGGGAA
ACATCATCTGGCACGGAACATCGATTCGATCATCTGAACGTCTTAGTTCG
ACATCATTCGGTTACGGCACTGAGAGTAGTATCGGCAAGCTATGGTCCAG
GCAAGAAACTGTGTTACTGTGTTATAC
FMO04661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1340-RC | 1843 | CG1340-RC | 223..1364 | 38..1151 | 4955 | 97.1 | Plus |
| CG1340-RA | 1851 | CG1340-RA | 223..1364 | 38..1151 | 4955 | 97.1 | Plus |
| Rbp2-RC | 2640 | CG4429-RC | 97..353 | 204..460 | 355 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30726309..30727154 | 38..883 | 4230 | 100 | Plus |
| 3R | 32079331 | 3R | 30727214..30727401 | 883..1059 | 455 | 91.5 | Plus |
| X | 23542271 | X | 16449905..16450079 | 204..378 | 350 | 80 | Plus |
Blast to na_te.dros performed 2014-11-28 20:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6882 | 652..735 | 123 | 64.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3370 | 650..727 | 118 | 65.9 | Plus |
FMO04661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:58 Download gff for
FMO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 219..1307 | 32..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:45 Download gff for
FMO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 219..1307 | 32..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:23 Download gff for
FMO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 219..1307 | 32..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:23 Download gff for
FMO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30726299..30727154 | 23..883 | 99 | -> | Plus |
| 3R | 30727215..30727410 | 884..1067 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:58 Download gff for
FMO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26552021..26552876 | 23..883 | 99 | -> | Plus |
| arm_3R | 26552937..26553132 | 884..1067 | 92 | | Plus |
