FMO04662.5prime Sequence
1234 bp (1023 high quality bases) assembled on 2008-08-08
> FMO04662.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTATGAT
GCCCCTCCGGATACTGCTGATCGCCTTTTCGCTGACGCTAGCCCAGAGCT
ATGGCGTCGGTGTCAATGGACCGCGTCCCGTGCGCACTGTAGAAACGCTG
ACGCAGTGGGGCCAGCTGGAGTTCGGATTTCCCACGGCGCAGGATCGGGA
GAACGCTCAGGCGGCGGGTAATCTGGTGCCCGAGAACGGCACTCCCATCG
ATGTGCAGCCACAGTACATGGCCAATGGCCAGATCAGGCTGTTCACCACT
ATTCCGCGCTTCGTGACGGGCATTCCCTACACCTTGGCCACCGTTTCAGC
GACGCAGGGCAGGAATGGCCCGCTGCTGCAGCCGTATCCCAACTACTCCT
GGCACAATGCCAACGGCGAGGACTGCGATCGCATAACATCCGCATTCAGA
GTGGCTATCACCGAGTGCAACCAGATGTGGGTGATCGATTCGGGTGTGAT
TGGAACCACCCAGCTGTGTCCGCCGCAGTTGCTGCAGTTCGCCCTGGCCA
CCGATCGCTTGCTGCATCGCTTCCGCTTCCCGAACGACACATACATCCCG
AGTGGATCGCTCTTCATCACGCCAAATGTACTCGTCCAGGATCCTCCGCC
TAGGGGAACCTGCAGTCGCACCATGATCTATGTGGCCGATGTGAGCTATC
ATGGCTTGGTGGTCTACGACCACCAGGCGCAGACATCATGGCGGGCTGAG
AACCGCTTTATGTATCCCGATCCGGACTACGGCAAGCACACCATAGCAAG
CGAGAGCTTCTACCTGATGGACGGCATGTTTGCACTGAAACAACGACAGC
GCAATCTTTACTTCCATCCGCTGGCCAGTGCAAGTGAGTATTCCGTGCCC
ACTGAGTGCTTGAACCGGCAGCAGAACTGGGCCAACGGGCCGGAGCTCTT
GCCCGAAGAAGTTCAGGCTGCTAGCAAGGCGGCGGAACGAGTGCGCCGCG
TCCGCCATCGATGGCAGGAACAACGTCTACTGCGTCACTTCAATCCAGTC
AAGCTCCTTTGTTGTGAACGCTGAACTCGCGTACAATTCCGGAACTTTGC
AATTGCCATCCAATCTCCGATGAACCTGGCATCTGTCGACGCATGAGAGG
TGTCGGCGAACCGCTAAAGCAGAGGAAAGCTTGATACTCCTCCAATCCAA
TACAGAACAACTCGCACGCAGCAGTCACACCGTC
FMO04662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-d-RA | 1751 | CG9889-RA | 294..1378 | 40..1123 | 4890 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23379337..23379936 | 457..1056 | 2550 | 97.2 | Plus |
| 2R | 25286936 | 2R | 23378866..23379282 | 40..456 | 2085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:40 has no hits.
FMO04662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:54 Download gff for
FMO04662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 292..1322 | 37..1069 | 98 | -- | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:05 Download gff for
FMO04662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 332..1362 | 37..1069 | 98 | -- | Plus |
| yellow-d-RA | 1518..1527 | 1070..1079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:16 Download gff for
FMO04662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 292..1322 | 37..1069 | 98 | -- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:16 Download gff for
FMO04662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23378862..23379282 | 36..456 | 99 | -> | Plus |
| 2R | 23379337..23379948 | 457..1069 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:54 Download gff for
FMO04662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19266385..19266805 | 36..456 | 99 | -> | Plus |
| arm_2R | 19266860..19267471 | 457..1069 | 97 | -> | Plus |
