FMO04663.5prime Sequence
1226 bp (1067 high quality bases) assembled on 2008-08-08
> FMO04663.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCACAC
ACACCTGGGACGCGCCGTGAAAAACATTGAGGCGCCACGCCCGTTGAAGA
CACAATCGCGATCGTCGTTGAAGAACAGCTACCTGGTGATCGAGGAGCTA
ATCCAGTTGATAGACAACGTGACCGTCGGTCTTCAGTCGTGCAACACCAC
GCCGGAATCGATCACGCTGCTCCTGCACAACCTCCGGGTGCATGGACCGC
AACTGGAGGCGGTGTCCAAGGATACACTGGACCGGGCCTTCGTCGTTTTC
CGCAACGCTTCGCAGGACGAACGGCTGAATATAACGACGCGCCTCAAGCT
GCTCGAACTCATCGAGCTGCGCGCCAAGAGCTGGGACAATGACGACACAA
TCGCGTACTACAAGTCCAAGCAGCAGATCTCCAACGTGGAGCTGCCTTCG
GAATACCAGTACGATGCCGGCGTGCAGCCTGGCGCCTTCAGCACCTCCCC
CACATTCGGCGTCAGCGGCGGTGTTGGTGGCGTTAACGATGGAGCCGCAG
CCGCCGCTGCCGCCGTCTTCAATGCAGCATCTGCAGCTGCAGCCGCCCAA
GCTGCGGCCATTGCGGCCGTGGGCACATCCAACCAGCAGCACATGCTGCT
GCCGCCCGGTGAGGTCATTCGTAATTCGGGCAAGTTCCCCAAACCGACCA
AGATTCCTGGCAAGACGTACTGCAAGGACGAGGTCGTGATTCGCAATGCT
GACTCCGGCAAAGTAATGGGCATCAAGGGGCGTCGCGTGCACATGATCGA
GGAGCTAAGCGAAACCATTATATCGTTTCAAAGAGTCAACCCGGGTGCCA
AGGAGCGTTTGGTGCAGATTACTGGTCCAGCTGAGGAAAAATTAACTATG
CCAAACAACTTATGGAGGACACCATTCGTCGGAACGCCTCGCCGGTGCGC
CTGGAACCCGCTCCTGCCGTTGGAGGATCCTGCCTCCTCGCTTAACTCGT
CCACTCGGACGACGCCATTGTGCAACCAAGAACGCCACGGAAGCAGTTTG
GCCAACCGGGCTAAGCTTAACTCGGCCAAACTCATGACGCCCAAGCTGCT
GCCAAGCAATCTCGCAGCAATGCACCACTAACGCCTTCACCTGCAGCACA
ACGGAGCACTAGGTCGAGTACGCGCGACGTAGCGGGGCATGTCTAGGCGA
ACGCGCTGTCGATAAGCTGTGTGAGC
FMO04663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RD | 3034 | CG2950-RD | 231..1349 | 40..1149 | 5165 | 98.1 | Plus |
| mxt-RG | 2878 | CG2950-RG | 231..1349 | 40..1149 | 5165 | 98.1 | Plus |
| mxt-RE | 2351 | CG2950-RE | 246..1364 | 40..1149 | 5165 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4845642..4846043 | 441..40 | 2010 | 100 | Minus |
| 2L | 23513712 | 2L | 4845254..4845577 | 763..440 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 4844481..4844646 | 1059..896 | 670 | 97.6 | Minus |
| 2L | 23513712 | 2L | 4845087..4845162 | 835..760 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 4844717..4844774 | 891..834 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:18 has no hits.
FMO04663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:57 Download gff for
FMO04663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RE | 244..1383 | 37..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:58 Download gff for
FMO04663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RC | 221..1360 | 37..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:26 Download gff for
FMO04663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mxt-RE | 244..1383 | 37..1166 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:26 Download gff for
FMO04663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4844366..4844646 | 896..1166 | 91 | <- | Minus |
| 2L | 4844712..4844772 | 836..895 | 98 | <- | Minus |
| 2L | 4845087..4845158 | 764..835 | 100 | <- | Minus |
| 2L | 4845254..4845575 | 442..763 | 100 | <- | Minus |
| 2L | 4845642..4846045 | 37..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:57 Download gff for
FMO04663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4844366..4844646 | 896..1166 | 91 | <- | Minus |
| arm_2L | 4844712..4844772 | 836..895 | 98 | <- | Minus |
| arm_2L | 4845087..4845158 | 764..835 | 100 | <- | Minus |
| arm_2L | 4845254..4845575 | 442..763 | 100 | <- | Minus |
| arm_2L | 4845642..4846045 | 37..441 | 99 | | Minus |
