FMO04664.5prime Sequence
1216 bp (1059 high quality bases) assembled on 2008-08-08
> FMO04664.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCATCCTC
TGGCCAGACGGCCCATAAACGTTGAGCAACTGTCGGTACAACAGCTAGAA
AACCGGGTGCGGGATCTAACGCAGCGTCTGCAGCAGGCGGAAAGACAGCT
CACTGAGAGCAACACAGAGCGGGAAATATGCCACAAGCGCTTGGAGGTTG
TCAGCCAGGCCCACGAGTGTCGCATCACAGAGATGCACTGTGTCATCGCC
GAGTTAAGCAAGAAATTGCGCAGTAAGCAGGACCACGTTATCATGGAGGA
GCAGGAGCCCGACGGCAGCGAACTCAGCTTTCAGGAGGGTTCAGTGTACA
ATTCCGAGCTTAACCTCACCAATCCTGATGCCGAATGTCAAACAGAACCA
CTGGAAGACTTCGAGGGCGCCTGCAGTACCACCAGCGTGGGTAACGTTGC
CCACAAACCGCCGGAACTGAGCCATAAGGGACAAGTGGAGGCACTGCAGG
AGGAAGTTCTGCACTTGAGAGCTCGAATCGCCCTCCTCCAGTCCGAGATT
TCCACCAAGGATGCTGCTGTGGTCGAGGAACAGACCAAAGTCGCCTTCGA
CTGCGAATCGGAAGTCAACGAGTGCGGACAGCGACTGAATGATTTGAATG
TTTGCACTTCCTTGACAAGTCCGCAAAAACGCATTCCAGCGGTACCGAAA
ATGGCTGAACGGGTTAAGTTGCGGTGCGCCAGCAAACATGAATCCGGAGA
AGATCCATCCCAAGATACTTCATTGAGCAACGAGCAAATTAATCTGGTCG
AACATTTGGTGTCGGAGCTAAAGGAGCAAAATCTATATATGGAGAACTTT
ATGGAGCCCCTACATTTGAGCAAAGACTTGGAGCGACTGCAACGACGTGT
TGAACAATTGGAGATGCGAAACACCATGCTGGCACTGACGCTAGACGAAT
GCAAGGAGCACACTGAGCATCTGTATCTGCTATGCGGAAAGTACGAGTCC
GATGCGGTGCTCTCAGTTGGCGCTTAATTGCAGTGATCGCGCATCGAGCT
ACGACGTATGTTGCTCTTGCTCGAAAGCAGTTGCACTGCTTGGGGAGAAT
CATGCAACGAAAGAAGTCGACGATCGGTGGAGGCGGTGCAGTACCTGTCT
AGCCGTGGATGCGAAAACGTTGTGTAAACAGCTGTGACCGGTGCAACCAA
CAACTACAACTCTTGA
FMO04664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-RD | 2635 | CG34404-RD | 85..1197 | 38..1138 | 5170 | 98.4 | Plus |
| CG34404-RE | 2702 | CG34404-RE | 185..1264 | 71..1138 | 5005 | 98.3 | Plus |
| CG34404-RC | 2890 | CG34404-RC | 520..1599 | 71..1138 | 5005 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15365960..15366290 | 650..320 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 15366347..15366596 | 320..71 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 15365449..15365710 | 1042..783 | 1195 | 98.9 | Minus |
| 3R | 32079331 | 3R | 15365771..15365905 | 784..650 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:58 has no hits.
FMO04664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:35 Download gff for
FMO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1209 | 38..1147 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:30 Download gff for
FMO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1209 | 38..1147 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:17 Download gff for
FMO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1209 | 38..1147 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:17 Download gff for
FMO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15365771..15365904 | 651..784 | 100 | <- | Minus |
| 3R | 15365407..15365708 | 785..1079 | 96 | <- | Minus |
| 3R | 15366347..15366596 | 71..320 | 100 | <- | Minus |
| 3R | 15366664..15366696 | 38..70 | 100 | | Minus |
| 3R | 15365960..15366289 | 321..650 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:35 Download gff for
FMO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11191129..11191430 | 785..1079 | 96 | <- | Minus |
| arm_3R | 11191493..11191626 | 651..784 | 100 | <- | Minus |
| arm_3R | 11192069..11192318 | 71..320 | 100 | <- | Minus |
| arm_3R | 11192386..11192418 | 38..70 | 100 | | Minus |
| arm_3R | 11191682..11192011 | 321..650 | 100 | <- | Minus |
