FMO04665.5prime Sequence
1237 bp (1042 high quality bases) assembled on 2008-08-08
> FMO04665.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCTTAATTA
TGAAATACATCGACAGCATAAGCAGATACATGGACTCACATAGTGACTCG
AGGACAAAGGGCTGGCCCATGATGTCGTCCCCATTCCCCACACTGGCCGT
TTGCCTCACATATGTCTATCTGGTCAAGGTGCTGGGACCCCGATTAATGG
AGAACCGAAAGCCTCTGAATCTGCAAAACACTCTAGTCATGTACAATGCC
ATACAGGTTGTATTTAGCGCATGGCTGTTTTATGAGATAGGCATTTCCGG
TTGGCTAACTGGACATTATAGCTTCCGATGTCAGCCAGTCGACTATAGTA
ATAATCCTAGAACGTTAAGGATGGTTCATGCCTGCTGGTGGTACTACTTC
TCGAAGTTTACAGAATTCATGGATACGATTTTCTTCGTGTTGCGCAAGAA
GTCGAGCCAAGTTACCACACTGCACGTCATCCATCACGGCTGCATGCCCA
TGTCGGTCTGGTTCGGCGTCAAGTTCACACCGGGTGGTCACAGCACCTTC
TTCGGCCTGCTCAACACCTTCGTCCACATCGTGATGTACACCTACTACAT
GTTCTCCGCCATGGGTCCGCAGTACCAGAAATACCTCTGGTGGAAGAAGT
ACCTGACCACTCTGCAGATGGTCCAGTTCATCTTGATCATGGTGCACGCC
TTCCAGCTGCTCTTCATCGATTGCAACTACCCGAAGGCGTTCGTCTGGTG
GATTGGCATGCATGCCGTCATGTTCTTCTTCCTGTTCAACGAGTTCTACA
AGGCAGCCTACAGGAGCCGCATGATGAAAAAGAACGGAGCCCTGGCCCAC
GGACACGCCAAGCCCAATGGCTACTGCAAGAGCATCAACGCCCATGACGA
TCTGGCCATGCCACAGACCACGGAGCGACAGCGACAGCGACGCCCGCATC
CAAAGCCAACGGAGCAGCACCCCCGCCGAGCAATGACATGCAATGGGGTG
GAGACGTCTACAGCAGTTGCCAACGCAGCGCGCACAAGGGTCACCGAGGA
CTGGAGCAACGGTATGCCACCAAGCTGCTGACGACGCCCTCCCAGACTGA
AACAGCGAAGACGCCGAAAGCAGCTTTCTAGACATCGTGGCCGCGGCCCA
GGTAAATGCTAACCTATCCTATCCTATCTTATCCAACTAGCCATGGACTA
TCTCTTGTCCTATAGGTAACCTAGGATGGCTGCTGTG
FMO04665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31522-RF | 2883 | CG31522-RF | 454..1548 | 38..1119 | 4965 | 97.9 | Plus |
| CG31522-RB | 2216 | CG31522-RB | 322..1416 | 38..1119 | 4965 | 97.9 | Plus |
| CG31522-RD | 2760 | CG31522-RD | 331..1425 | 38..1119 | 4965 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4443902..4444058 | 826..670 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 4444110..4444249 | 672..533 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 4442875..4443056 | 1004..826 | 635 | 96.2 | Minus |
| 3R | 32079331 | 3R | 7982801..7983135 | 716..382 | 625 | 79.1 | Minus |
| 3R | 32079331 | 3R | 4446412..4446534 | 299..177 | 570 | 97.6 | Minus |
| 3R | 32079331 | 3R | 4444319..4444428 | 536..427 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 4446737..4446823 | 181..95 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 4445332..4445417 | 370..285 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 4467642..4467766 | 660..536 | 325 | 84 | Minus |
| 3R | 32079331 | 3R | 4444506..4444563 | 427..370 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 4447701..4447758 | 95..38 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 22555685..22555806 | 571..692 | 235 | 79.5 | Plus |
| 3R | 32079331 | 3R | 22559608..22559737 | 672..543 | 230 | 78.5 | Minus |
| 3R | 32079331 | 3R | 22532970..22533076 | 669..563 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:31 has no hits.
FMO04665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:06 Download gff for
FMO04665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RD | 324..1425 | 30..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:32 Download gff for
FMO04665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RB | 313..1414 | 30..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:20 Download gff for
FMO04665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RD | 324..1425 | 30..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:20 Download gff for
FMO04665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4442750..4443055 | 827..1119 | 92 | <- | Minus |
| 3R | 4443902..4444057 | 671..826 | 100 | <- | Minus |
| 3R | 4444112..4444248 | 534..670 | 100 | <- | Minus |
| 3R | 4444322..4444427 | 428..533 | 100 | <- | Minus |
| 3R | 4444506..4444562 | 371..427 | 100 | <- | Minus |
| 3R | 4445332..4445415 | 287..370 | 100 | <- | Minus |
| 3R | 4446425..4446532 | 179..286 | 100 | <- | Minus |
| 3R | 4446740..4446822 | 96..178 | 100 | <- | Minus |
| 3R | 4447701..4447762 | 30..95 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:06 Download gff for
FMO04665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 271054..271137 | 287..370 | 100 | <- | Minus |
| arm_3R | 272147..272254 | 179..286 | 100 | <- | Minus |
| arm_3R | 272462..272544 | 96..178 | 100 | <- | Minus |
| arm_3R | 273423..273484 | 30..95 | 93 | | Minus |
| arm_3R | 269834..269970 | 534..670 | 100 | <- | Minus |
| arm_3R | 270044..270149 | 428..533 | 100 | <- | Minus |
| arm_3R | 270228..270284 | 371..427 | 100 | <- | Minus |
| arm_3R | 268472..268777 | 827..1119 | 92 | <- | Minus |
| arm_3R | 269624..269779 | 671..826 | 100 | <- | Minus |
