FMO04666.5prime Sequence
1212 bp (1058 high quality bases) assembled on 2008-08-08
> FMO04666.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAATACATCCT
GGTAACTGGTGGCGTCATTAGTGGCGTGGGAAAAGGAGTGATTGCCTCCT
CGTTCGGAACGCTTTTGAAATCCTGTGGTCTGGATGTAACCTCGATCAAG
ATTGACCCCTATATCAATATAGATGCTGGAACCTTTTCGCCTTATGAGCA
TGGCGAGGTTTACGTTTTGGACGATGGCGCCGAGGTGGATCTGGATCTGG
GAAACTATGAACGGTTTTTGGATGTTACCCTGCATCGGGACAACAACATA
ACCACCGGAAAAATTTACAAGTTGGTCATTGAGAAGGAGCGCACTGGCGA
GTACTTGGGCAAAACGGTTCAAGTTGTCCCACACATCACTGATGCCATTC
AGGAATGGGTGGAGCGCGTGGCCCAGACACCCGTTCAGGGATCTTCAAAG
CCACAGGTGTGCATCGTGGAATTGGGAGGAACGATTGGTGACATCGAAGG
CATGCCTTTCGTAGAGGCCTTCCGTCAGTTTCAGTTCCGCGTAAAGAGAG
AGAACTTCTGTTTGGCCCATGTGTCGCTGGTTCCGTTGCCAAAGGCTACC
GGAGAACCCAAGACCAAGCCCACACAAAGTTCGGTCAGAGAACTGAGAGG
ATGTGGCCTGAGTCCCGATTTGATTGTCTGCCGATCGGAGAAACCCATTG
GACTGGAGGTCAAGGAGAAGATCAGCAACTTTTGTCATGTGGGGCCGGAT
CAGGTGATATGCATCCACGATTTGAACTCCATTTATCATGTTCCGCTGCT
GATGGAGCAGAATGGTGTTATTGAATACCTAAATGAGCGCCTACAGCTTA
ATATCGACATGAGCAAGAGGACCAAATGCTTGCAGCAATGGCGAGATTTG
GCGCGTCGAACGGAGACCGTTCGCCGTGAAGTTTGCATCGCCGTCGTGGA
AAGTACACCAAGTTCACGGATTCGTACGCCTCCGTAGTTAAGCCCTGCAA
CATGCCGCCCTGCAGTGAATCGCAAACTGAACTGTCTTTATCGAGTCTGG
CTGCTGGAGAGGAACTTTGCATTCTGAGCCGGCAAGTACCAAAGATGCAA
AGCTATGCCATAGCATGGCATCTAGTCCGGTGATCGTTCCGGTGCAATGA
GCAGATCTGCATGCATGGACGGAGAGAAATCAAAGGCCATGTCCTTGGCC
ACTACTGTCTTT
FMO04666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTPsyn-RC | 2627 | CG45070-RC | 438..1545 | 37..1128 | 5110 | 98.4 | Plus |
| CTPsyn-RA | 2406 | CG45070-RA | 217..1324 | 37..1128 | 5110 | 98.4 | Plus |
| CTPsyn-RB | 2423 | CG45070-RB | 400..1341 | 203..1128 | 4280 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15111085..15111588 | 372..875 | 2520 | 100 | Plus |
| 3L | 28110227 | 3L | 15110815..15110986 | 202..373 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 15098351..15098525 | 37..211 | 845 | 98.9 | Plus |
| 3L | 28110227 | 3L | 15111653..15111877 | 876..1091 | 665 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:05 has no hits.
FMO04666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:24 Download gff for
FMO04666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RC | 214..1284 | 30..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:34 Download gff for
FMO04666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6854-RC | 212..1282 | 30..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:18 Download gff for
FMO04666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RA | 214..1284 | 30..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:18 Download gff for
FMO04666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15098348..15098516 | 30..202 | 97 | -> | Plus |
| 3L | 15110816..15110986 | 203..373 | 100 | -> | Plus |
| 3L | 15111087..15111588 | 374..875 | 100 | -> | Plus |
| 3L | 15111653..15111866 | 876..1081 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:24 Download gff for
FMO04666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15104187..15104688 | 374..875 | 100 | -> | Plus |
| arm_3L | 15091448..15091616 | 30..202 | 97 | -> | Plus |
| arm_3L | 15103916..15104086 | 203..373 | 100 | -> | Plus |
| arm_3L | 15104753..15104966 | 876..1081 | 95 | == | Plus |
