FMO04667.5prime Sequence
1250 bp (1058 high quality bases) assembled on 2008-08-08
> FMO04667.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAATTTTGAC
GATACGTTGCAACGCGCCCGCCTTGCCTTTTCCAGTGGAAAGACCAGGAA
TGTCAGCTTTCGACGCAAGCAGCTGGAGAATTTGCTGCGTTGCTATGAGG
AGCACGAGAACGAGATCATCAGCGCCTTGGAGGCGGATCTGCGACGTCCC
AAGCAGGAGAGCCTCATCGTGGAAACGGAATTCATGAAGAACGACATCAG
GCACATCCTATTCCAGCTCGACGAGTGGGTGCAGTCGGAGAAGCCGCCCA
AGTCGTTTGTGAACATGATGGACGACGTCCAGATCTACAATGACCCCTTC
GGAGTGGTTCTGGTGATCGGCGCCTGGAACTACCCGCTGCAGCTGCTGCT
CGTGCCAGTGGCTTCCGCCATCGCCGCCGGAAACTGTGTGGTGATCAAGC
CCAGCGAGATTGCCGCCAACTGCGCCAAGTTCATTGCCGATGTCATTCCA
AAATATTTGGATAATGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGA
AACGGCGGAGCTGCTCAACCAGCGTTTCGACTACATCTTCTACACGGGCT
CCACGCGCGTAGGCAAGATTATCCACGCCGCGGCCAACAAGTACTTGACC
CCCACCACCTTGGAGCTGGGTGGCAAAAGCCCCTGCTACATTGACAAATC
TGTGGACATGCGCACTGCGGTCAAGCGCATCCTGTGGGGCAAGCTGATTA
ACTGCGGACAGACCTGCATCGCTCCGGACTACATCCTCTGCTCCAAGGAG
GTGCAGAGAAGTTCATCGTGGAGGCCAAGGACGTGCTGAAGGAATGGTAC
GGCGAGAATATCCAGAGCAGTCCGGGATCTAAGCCGTGTGATCAACGCCA
ACAACTTTCCAGCGCCTTCTTGGCCTAATGAAGTCCGGCCGCGTGCCGTC
GGAGGTAACTACGATGCCAGCGAGCGTTTCATCGAACCACATTCTTGGTG
GACGTGAAGGAGACCGATCCCATCATGGAGAAGAGATCTTCGGCCCCATC
TTTGCCCATTCTTCAATGTGGAAGAGGGCTACGATGCCATCAGGTTCAAC
AATGCCAGAGAGAGTCCACCTTGTTCTTGTACTTTTTCACGCCGAAACGC
AAGAGGTCCGGATCTGTTTATAACGGACCAGTCCGGCGACTGTGGCCGTA
ACGACACATATATGCACTATAGTGCCCCTTTATGATGTGTGGTGCCATCT
FMO04667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-RR | 1840 | CG11140-RR | 193..1377 | 36..1220 | 5200 | 96.9 | Plus |
| Aldh-III-RP | 2306 | CG11140-RP | 659..1843 | 36..1220 | 5200 | 96.9 | Plus |
| Aldh-III-RN | 2352 | CG11140-RN | 439..1623 | 36..1220 | 5200 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7470393..7470617 | 516..292 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 7469618..7469847 | 907..678 | 1055 | 99.1 | Minus |
| 2R | 25286936 | 2R | 7470702..7470883 | 293..112 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 7469909..7470072 | 679..516 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 7469360..7469557 | 1108..912 | 600 | 92.5 | Minus |
| 2R | 25286936 | 2R | 7473288..7473346 | 112..54 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:50 has no hits.
FMO04667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:00 Download gff for
FMO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RP | 650..1781 | 27..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:02 Download gff for
FMO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RB | 392..1523 | 27..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:18 Download gff for
FMO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RN | 430..1561 | 27..1162 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:18 Download gff for
FMO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7469360..7469557 | 912..1108 | 93 | <- | Minus |
| 2R | 7469615..7469845 | 680..911 | 98 | <- | Minus |
| 2R | 7469909..7470072 | 516..679 | 100 | <- | Minus |
| 2R | 7470394..7470615 | 294..515 | 100 | <- | Minus |
| 2R | 7470702..7470882 | 113..293 | 100 | <- | Minus |
| 2R | 7473288..7473346 | 54..112 | 100 | <- | Minus |
| 2R | 7473722..7473740 | 36..53 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:00 Download gff for
FMO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3360793..3360851 | 54..112 | 100 | <- | Minus |
| arm_2R | 3361227..3361245 | 36..53 | 94 | <- | Minus |
| arm_2R | 3356865..3357062 | 912..1108 | 93 | <- | Minus |
| arm_2R | 3357120..3357350 | 680..911 | 98 | <- | Minus |
| arm_2R | 3357414..3357577 | 516..679 | 100 | <- | Minus |
| arm_2R | 3357899..3358120 | 294..515 | 100 | <- | Minus |
| arm_2R | 3358207..3358387 | 113..293 | 100 | <- | Minus |
