FMO04668.5prime Sequence
1232 bp (1050 high quality bases) assembled on 2008-08-08
> FMO04668.5prime
TAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAGAG
ACCAATAAAGTCCGTCTCCTCAGGGGTTATCTCTACGCCGGGGAGCTGCG
TCAATTAACGGCGGGCGGTAGTAAGACCGCGTGCCAGGAGCTATCACTTG
AGCCCTTCTGGCAGCCGCAGCCACTGCTGAGCAAGTTAACCGATGGGGGA
TCCTTCGAGCTGCAGGAGCAATTCGCCATCATCAATGATGAGCGCTTCCT
GCAGAGCGTCGAGCGGCAGCAGCTGGTCATGGAGCTGCGTCCATTGGGAG
GAGTCGTACGACTTCCGCTGCACCAGTTCTTCATCGCCTACAGAGACTCC
AGCATCACAAATCACCTGTGCAAGGGAAAGCTACCAGTGATCTCCATCGA
TGGCTGGGCACCAATTGTCAGTGCTGAGAACAAGACGCCTCTGGGCGAGC
TCAAGGTGCTTCTGGCCATTGGAAGTGAGTCGCAGATTGCTCAACTGAAG
CAGCTGCGTGGCTTCGACCATGACAACAACCAAGTACCGGCTCCAAGCCG
GACCACAGACTTACTCGACATGCTTCAAAATGCCATCGCAGCTCCGACGC
CGAATATCGCAGGTCCAGTAATGCCGCCGCCACCGGCTCCTCCAGCGCCC
AGTACCTTTAGCTTCCAGTTGCGCATCGTGGGAGCTGCTGGACTGCCCCT
AAATCCCGGCTATGGGAAATCGAAGAAGCAAGTAAAACGTCAGTCGGCAG
CCAAGCGCTTCCCGCCCAACGAACCTCCCAACACCTATGTGACCTTCCAG
GCCATCAGTTGCAATAGTCAGACCTATAAGTCGCACGAAAGGATTGGTGT
ACGCCACACCAATTGTACCCAAATCGACGAAGCCCCAGTGGGCTTAGCAA
GTTCCGCGGGACGTGAGTCGCGATTATCGCAGCAATCCCCAGAAGCTTTT
CATTCTGAAGCTTTGGAAAAGCCGGTGTTAGCCCAAATGGCCATCACAGA
GCCGTCTCCCATGAGATGCCATATAGGATTCGCTGCACTAATCTACCAAA
AACAGCGGGCGGAGGCTTCCCAGCGGATGGCATAACATAGTAACTCATGA
ACGGTGTGACTGGGGGATCGAAGGCCCACGTGGAGCCCAATTCGCCCAGG
TAAATCCGATATCGATCGTCGGAAGTCCATGCAACTGGTCACTTGGCATT
GGGCCAGGGCATCAGAGCGCAAATATCACGCC
FMO04668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-RA | 2813 | CG32425-RA | 949..2148 | 41..1225 | 5170 | 96.8 | Plus |
| CG32425-RE | 2827 | CG32425-RE | 963..2162 | 41..1225 | 5170 | 96.8 | Plus |
| CG32425-RC | 2077 | CG32425-RC | 213..1412 | 41..1225 | 5170 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20512519..20513075 | 379..936 | 2645 | 99.5 | Plus |
| 3L | 28110227 | 3L | 20512046..20512385 | 41..380 | 1700 | 100 | Plus |
| 3L | 28110227 | 3L | 20513138..20513361 | 937..1149 | 325 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:32 has no hits.
FMO04668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:27 Download gff for
FMO04668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RC | 205..1342 | 32..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:07 Download gff for
FMO04668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RA | 941..2078 | 32..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:59 Download gff for
FMO04668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RC | 205..1342 | 32..1158 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:59 Download gff for
FMO04668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20512038..20512385 | 32..380 | 98 | -> | Plus |
| 3L | 20512521..20513075 | 381..936 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:27 Download gff for
FMO04668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20505138..20505485 | 32..380 | 98 | -> | Plus |
| arm_3L | 20505621..20506175 | 381..936 | 99 | -> | Plus |
