FMO04669.5prime Sequence
1217 bp (1075 high quality bases) assembled on 2008-08-08
> FMO04669.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTATTGTGC
ACGAGCGGGTTCCGGATATGAAGCGCTATCCGCCGCTGCCGGACATCTTC
CTGGACAACGTGCCGCATATTCCGTGGGCCTTTAATATGTGCGAAATAAC
CGGCTCACTATTGTTCACCATTTGGGTGGTCGTGCTAACCTTCCACAAGT
ATAGATTGGTCCTACTGAGGCGATTCTTTGCTCTGGCGGGCACGGTTTTC
CTGCTGCGCTGCGTCACCATGTTGATCACGTCGCTGAGCGTACCGGGAAC
GCATCTGCAGTGCAGCCAGAAGGACTTTGCCATCGATGATCCCAATGTGG
ACATGGTGGGCGCCTTGATTATCCGCATGTCACGAGCCTATCGCATCTGG
AGCGGCCTGGGCATGTCCATTCAGGGAGTGCGGACCTGCGGCGATTATAT
GTTTAGTGGTCACACGGTGGCCTTGACCCTGCTCAACTTCTTTATCACAG
AATACACGCCGCGGAATCTGTACTTCCTGCACACGCTGACCTGGCTGCTC
AACATGTTTGGCATATTCTTCATCCTGGCTGCCCACGAGCACTACTCCAT
CGATGTGTTTGTGGCCTTCTATATCACCTCACGTCTGTTTCTGTACTATC
ATACTCTAGCAAATAACAGGGCTCTCATGCAAAGCGACTCCAAGAGGACG
CGTGTTTGGTTTCCCATGTTTAGCTACTTCGAGAGCAGTGTCGATGGAAT
GGTGCCCAATGAATACGATACACTTGGCTCCCTCATCGATGGGATTATTG
AGCAGATCTTCAAGGCCAAGGATCAATTGGCCATATCCGTGAAGCGCTGC
TGGCTGGATGCCCCGCTGTCCGGCAATTCATCGGCTCACATGTTTGGCGG
AGAATCTGAACAATGTTTGCGCAATGGCACAGCATCGGCCGCTTTCTTTA
GTCCTCACAGTCGCTGATCGGAGGATTGGGTGGTTCAGAGGAGCCAGACG
CATTTGAATAGCGCCATTCCGGGTCCTCCACACCCCACACCAGCTACATC
GGGCGCGACAGAGTTTGCCGACCAAAAGAAGACTTCAGGGATGGCAGTGT
GGAATCCTTCCGCCCGAACGTTGCTGCGGTTCAGCAGGCCAAACGTCAGA
TTCGCGATGAGTGGAGCATCTCGCAGCCTTCTAGAACAACTGTTTGGGCC
GCGGGCCAGGTAATGGG
FMO04669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 893..2027 | 38..1160 | 5115 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7375405..7375870 | 503..38 | 2330 | 100 | Minus |
| 3L | 28110227 | 3L | 7374679..7375116 | 1103..670 | 1745 | 96.8 | Minus |
| 3L | 28110227 | 3L | 7375179..7375346 | 671..504 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:10 has no hits.
FMO04669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:47 Download gff for
FMO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 883..1965 | 28..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:08 Download gff for
FMO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RB | 161..1243 | 28..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:40 Download gff for
FMO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 883..1965 | 28..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:40 Download gff for
FMO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7375180..7375346 | 504..670 | 100 | <- | Minus |
| 3L | 7374676..7375115 | 671..1107 | 96 | <- | Minus |
| 3L | 7375405..7375880 | 28..503 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:47 Download gff for
FMO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7367776..7368215 | 671..1107 | 96 | <- | Minus |
| arm_3L | 7368280..7368446 | 504..670 | 100 | <- | Minus |
| arm_3L | 7368505..7368980 | 28..503 | 99 | | Minus |
