FMO04670.5prime Sequence
322 bp (251 high quality bases) assembled on 2008-08-08
> FMO04670.5prime
TCGTATAGCAAGATTCTCTTATCAATCGACATGGCATTGCCCCTATAAAA
CAGAAAACCAGGCCAAGCTGCAGCTGATGCAGGAAATGGAGATCGAAATG
ATGTCCGATTTATATAACCGCATGACCAACGCTTGCCACAAAAAGTGCAT
TCCGCCGCGCTACTCCGAGTCGGAGTTGGGCAAAGGCGAGATGGTGTGCA
TCGATCGCTGTGTGGCCAAATATCTGGACATTCACGAGAAGATCGGCAAG
AAGCTGACGGCCATGTCCATGCAGGACGAGGAGCTGATGAAGAAGATGTC
TAGTGCAAGCTTTCTAGACCAT
FMO04670.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tim10-RA | 691 | CG9878-RA | 309..556 | 57..304 | 1225 | 99.6 | Plus |
| Tim10-RB | 762 | CG9878-RB | 380..627 | 57..304 | 1225 | 99.6 | Plus |
| CG42497-RA | 691 | CG42497-RA | 309..556 | 57..304 | 1225 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21690350..21690475 | 304..179 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 21690637..21690760 | 180..57 | 605 | 99.2 | Minus |
Blast to na_te.dros performed 2014-11-28 19:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6461 | 111..38 | 140 | 68.4 | Minus |
FMO04670.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:23 Download gff for
FMO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42497-RA | 281..562 | 31..311 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:14 Download gff for
FMO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tim10-RB | 277..558 | 31..311 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:10 Download gff for
FMO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42497-RA | 281..562 | 31..311 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:10 Download gff for
FMO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21690344..21690474 | 180..311 | 97 | <- | Minus |
| 2R | 21690638..21690788 | 31..179 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:23 Download gff for
FMO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17578143..17578293 | 31..179 | 94 | | Minus |
| arm_2R | 17577849..17577979 | 180..311 | 97 | <- | Minus |
