FMO04674.5prime Sequence
654 bp (654 high quality bases) assembled on 2008-08-08
> FMO04674.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCTCACAA
ACGTAGGAACCGAGTACATGCGAACCAAAGGAATTTCACAGCGCGACGCG
TTTCTGTGGCCAAACTGTCGTCTGCACCGCCGAATGTGCTCGTCGAATCC
TGCAACGGTTCTCATGCGGATAACAGTTCGCCGGACAGTCCGAAAGCCAA
AGAAGGTGCAATGACCAACGGGAAAAACCCGGAGATCAAGTTAGCCGTGC
CCAAATGCAACACCACCGTGCGCAAGCAGAACGAGGCCCATATCATATCC
AACATTAAGCTGGATATGAACCTTAATAAGGATTCTAACTTTATCGCCCC
ACAGATCACCAAAAAGATGAACTTCGCTCCGAATCGTGTTGTATTCGGGG
TCCTGGTGCCTCTCAATGTCAACGATTCTGTGCTGGTGCCGCACAATAGA
AAGCCGGATGCCTTAAAGCACACATCGAAAGAATCGGAATCATGCAAGGC
CATAAGCGAGCCCCAGCTAGCCGACTATGCGGAGAAAGTAGATCCCATGA
TAATGGCTGTTAAGGAACCAGTACTCCACTTGGATTGGGAACCAGGGCCC
TTCGATTTTTTCGGCGCATATAGGAGAACATACAACGCAAGCTTTCTAGA
CCAT
FMO04674.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd4-RB | 681 | CG17295-RB | 44..639 | 40..635 | 2935 | 99.5 | Plus |
| Rcd4-RA | 733 | CG17295-RA | 96..691 | 40..635 | 2935 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8382956..8383270 | 40..354 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 8383327..8383615 | 347..635 | 1385 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:47 has no hits.
FMO04674.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:52 Download gff for
FMO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd4-RA | 96..691 | 40..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:17:01 Download gff for
FMO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17295-RA | 142..737 | 40..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:36 Download gff for
FMO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd4-RA | 96..691 | 40..635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:36 Download gff for
FMO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8382956..8383270 | 40..354 | 100 | -> | Plus |
| 2L | 8383335..8383615 | 355..635 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:52 Download gff for
FMO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8382956..8383270 | 40..354 | 100 | -> | Plus |
| arm_2L | 8383335..8383615 | 355..635 | 98 | | Plus |
