FMO04682.5prime Sequence
755 bp (755 high quality bases) assembled on 2008-08-08
> FMO04682.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTACCTG
CTCAGCATGACCTTGCTGCTGGCCATCGGGCTGCAGCAGATCGACGCCCA
CGGCATGATGCTGTCCCCGCCGAGCCGATCCTCCCGTTGGCGCTACGATG
GATCCGCACCCCAGAACTGGAACGACAACGAACTCTTCTGCGGCGGTTTG
TACACGCAGTCCAACAATGGAGGTCGCTGTGGTCTGTGCGGCGACAACTT
CCTGGATGCCCAGCCCCGTGCCAACGAGATCGGAGGAAGCATCGGTGGAG
CTGGTGTGGTGACCAGGAGCTACGTTGCTGGCAATACCATCACCGTGGGC
GTGAAGATCACCACCAATCACTTGGGTTACTTCGAGTTCCACCTGTGCAA
CCTGGACGCCTTCGGTGCCGAGTCGGAGGAGTGCTTCGATCAGAACCGCC
TGCGATTCATCGATGGAAGCGATAGAAAGGATATCGGCGATCAGATGGGC
GAATTCGATGTGACAGTCGTCCTGCCGGAGGGTCTTACCTGCTCTCACTG
CGTCCTCCGCTGGACCTATGTGGGTGCCAACAACTGGGGCATCTGCGATA
ATTCCGGAAACGGAGCCTTGGGCTGTGGCCCACAGGAAACATTCAAGAAC
TGCGCCGATGTGAGCATCTACTGGGGTCGCAACCTGGTCAAGGAATTGGT
CGGTGGCGGAGATCCAGTGGCTCCGGTTGAGGTCGCCGCAAGCTTTCTAG
ACCAT
FMO04682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4362-RA | 829 | CG4362-RA | 30..729 | 38..737 | 3485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20306544..20306916 | 576..204 | 1850 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20307343..20307508 | 203..38 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 20306316..20306477 | 737..576 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:09 has no hits.
FMO04682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:00 Download gff for
FMO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4362-RA | 26..732 | 31..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:17:00 Download gff for
FMO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4362-RA | 10..715 | 31..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:22 Download gff for
FMO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4362-RA | 27..733 | 31..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:22 Download gff for
FMO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20307343..20307515 | 28..203 | 97 | <- | Minus |
| 3R | 20306311..20306476 | 577..741 | 98 | <- | Minus |
| 3R | 20306544..20306916 | 204..576 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:00 Download gff for
FMO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16133065..16133237 | 28..203 | 97 | <- | Minus |
| arm_3R | 16132033..16132198 | 577..741 | 98 | <- | Minus |
| arm_3R | 16132266..16132638 | 204..576 | 99 | <- | Minus |
