FMO04687.5prime Sequence
650 bp (650 high quality bases) assembled on 2008-08-08
> FMO04687.5prime
CTTCGTATAGCATAAATTATACGAAGTTATCAGTCGACATGGCTGGCCGC
TCCATCGTCCACTTTTTTCTGGGGTCCGTGGCAATCGCCCTGGGATCGTA
CATCTACTTCACCATGCAAATCGACATGTCTGCTAACGGAGATTACAAGA
ACGCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGAT
GTTTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGC
CTCCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAA
AGGAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAAT
CAGTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCA
CCTGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATG
TGAATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAG
ACCGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGT
GAACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCA
TGGACATCGCCAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACCAT
FMO04687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHGPx-RC | 1148 | CG12013-RC | 368..961 | 39..632 | 2970 | 100 | Plus |
| PHGPx-RA | 803 | CG12013-RA | 102..616 | 118..632 | 2575 | 100 | Plus |
| PHGPx-RD | 1014 | CG12013-RD | 315..827 | 120..632 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3327860..3328185 | 120..445 | 1630 | 100 | Plus |
| 3L | 28110227 | 3L | 3328249..3328439 | 442..632 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 3326632..3326712 | 39..119 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:42 has no hits.
FMO04687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:33 Download gff for
FMO04687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RC | 362..961 | 30..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:46 Download gff for
FMO04687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RC | 336..935 | 30..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:49 Download gff for
FMO04687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RC | 362..961 | 30..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:49 Download gff for
FMO04687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3326626..3326712 | 30..119 | 96 | -> | Plus |
| 3L | 3327860..3328183 | 120..443 | 100 | -> | Plus |
| 3L | 3328251..3328439 | 444..632 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:33 Download gff for
FMO04687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3326626..3326712 | 30..119 | 96 | -> | Plus |
| arm_3L | 3327860..3328183 | 120..443 | 100 | -> | Plus |
| arm_3L | 3328251..3328439 | 444..632 | 100 | | Plus |
