FMO04689.5prime Sequence
674 bp (674 high quality bases) assembled on 2008-08-08
> FMO04689.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGACAAT
TTTTCAAGAACACCATATTCTGATGGGCACGCTGCAACCCATGAGGAAGC
ATCAAAACCCCACTACACTACCACTACGAGTTCTTTTAGTAGAACTCCGG
TCTCGCCGTACCTCAACTATGATTCGCGATATCTGCAGCAAGCACAGCCA
GAGTTCATTTTTCCCGAAGGGGCCAACAAGCAGCGTGGACGCTTCGAGTT
GGCCTTCTCTCAGATAGGCACTTCGGTAATGATTGGCGGTGGAATTGGCG
GCCTAGCAGGTGTTTATAATGGTTTAAAAGTCACAAAAGCACTCGAGCAG
AAGGGAAAAGTTCGTCGAACACAGTTACTTAATCACATTATGAAGCAAGG
TTCCGGCACAGCTAACACATTAGGTACATTGACGGTGCTGTATTCGGCTT
GTGGAGTTTTGCTGCAGTTTTTCCGCGGAGAAGATGATCATATAAACACA
GTAATTGCGGGCTCTGCCACAGGACTATTATACAAGTCAACAGCTGGCCT
TAGGACGTGTGCTTTTGGTGGAGCTATTGGGCTGGGCATCTCGTCCCTCT
ATTGCTTATACCTAATAGCACAGGAAAACAGTTCGAACTCAAGTCCCAAA
TACCTAGCAAGCTTTCTAGACCAT
FMO04689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40042-RA | 893 | CG40042-RA | 199..816 | 39..656 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23312946..23313230 | 375..91 | 1425 | 100 | Minus |
| 2L | 23513712 | 2L | 23312719..23312888 | 543..374 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 23312542..23312658 | 656..540 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 23313329..23313380 | 90..39 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:57:08 has no hits.
FMO04689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:21 Download gff for
FMO04689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40042-RA | 193..816 | 34..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:24 Download gff for
FMO04689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40042-RA | 220..843 | 34..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:15 Download gff for
FMO04689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40042-RA | 193..816 | 34..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:15 Download gff for
FMO04689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23312948..23313230 | 91..373 | 100 | <- | Minus |
| 2L | 23313329..23313386 | 34..90 | 96 | <- | Minus |
| 2L | 23312542..23312654 | 544..656 | 100 | <- | Minus |
| 2L | 23312719..23312888 | 374..543 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:21 Download gff for
FMO04689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2LHet | 168463..168745 | 91..373 | 100 | <- | Minus |
| 2LHet | 168844..168901 | 34..90 | 96 | <- | Minus |
| 2LHet | 168057..168169 | 544..656 | 100 | <- | Minus |
| 2LHet | 168234..168403 | 374..543 | 100 | <- | Minus |
