FMO04702.5prime Sequence
1015 bp (1015 high quality bases) assembled on 2008-08-08
> FMO04702.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGATCTGTC
ATCGAGCCCGACCACAGCATCCAGCTTAATGAAGCCATCTACTGCTACGA
TATATGCACCAATGACTTTGCCTACAACCTAATCGCAGTGGCCTTCAGGA
AACACTTGAGTCTGCTGCTCGTTGGACTGCCGGAGGAGAGCGGCGAGTTC
GGGTACACACGCCTGCAGGACATGGACCTGGGCGAAAAGGAGCAGCGGAG
CGTGAGCGCACTGGCCTTCTCGCCGGACACCTCGCTCAACTGCACGCCCA
ACAATGTGACTTTGTGCGCGGCCAACGGCAGCCAGCTTAAACTATACCGC
ACCGATCTGGGCCAGTTCACCTCGCTCCAGGTGCTCCGTGGGCATGGGGA
CTACGTCAACGATGTATCCTGGGTTTGCGACGGCGAACTGCTGGCCTCCG
TTAGCGATGACTTCACCTGCAGATTCTGGACGACGACAGGCGGCGGGGAG
AATGTCATAACCTTTGGCCTGTCCTCCGCTGGAATGTCCGTCAAGAGTCA
CCCCGAGGATCCCAACAAGGTTCTTGTGGCGGAAAAGAAGGGCATCATTC
ATCTATACAATGTGACGCTCAAGCAGACAGTCATCTCCGTGGAGTCGCCC
AAATTCCCCCTGATGTCGGCGGACTGGGCCCACAGCAACCGGCTCTTCAT
CACCTCGCTGGCCGGCGGAGATGTGGTTACCTGGGACCTGAACCGACCCT
ATGTGCCCGCGGATGTCAAGCACGTCCACGAGGATTGCGGCCGGGTGGTG
CGCTTCGCGCCAGGCAGCTCCGAGATGGTTATCGCCATGGTCATCGGGCT
GACTCTCAAAGTGTTCGCGGCCAAGTCGACCGTTCCTCTGCTGGAGGCCT
CCCTGAAATCCTATGGGGGATGGCCTGGCCACCAGCGATTGCCGTACATT
AGTGCGGTTTCCGATAGGAAACTGCTCTTCTGGAAAGTGCAAATGAAGCA
AGCTTTCTAGACCAT
FMO04702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup37-RB | 1139 | CG11875-RB | 125..1084 | 39..998 | 4740 | 99.7 | Plus |
| Nup37-RA | 1107 | CG11875-RA | 93..1052 | 39..998 | 4740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25248172..25248582 | 182..592 | 2055 | 100 | Plus |
| 3R | 32079331 | 3R | 25248638..25249045 | 591..998 | 1935 | 98.3 | Plus |
| 3R | 32079331 | 3R | 25247963..25248107 | 39..183 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:34 has no hits.
FMO04702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:38 Download gff for
FMO04702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup37-RA | 87..1061 | 32..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:22 Download gff for
FMO04702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11875-RA | 80..1054 | 32..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:29 Download gff for
FMO04702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup37-RA | 87..1061 | 32..1009 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:29 Download gff for
FMO04702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25247957..25248106 | 32..182 | 97 | -> | Plus |
| 3R | 25248173..25248581 | 183..591 | 100 | -> | Plus |
| 3R | 25248639..25249054 | 592..1009 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:38 Download gff for
FMO04702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21073679..21073828 | 32..182 | 97 | -> | Plus |
| arm_3R | 21073895..21074303 | 183..591 | 100 | -> | Plus |
| arm_3R | 21074361..21074776 | 592..1009 | 98 | | Plus |
