FMO04705.5prime Sequence
1093 bp (1058 high quality bases) assembled on 2008-08-08
> FMO04705.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGAAACCAG
TGGACCCGCAGTGCGCATGCCTTGGGTGGAAAAGTACAGACCAAGCGGTC
TCGATGATTTGATATCTCACGAGGAAATAATATCAACAATAACCCGCTTT
ATAAGCCGCAAGCAGCTGCCCCATTTGCTGTTCTACGGACCACCTGGCAC
GGGAAAAACGAGTACAATCCTGGCCTGCGCTCGCCAATTGTATTCCCCTC
AGCAGTTCAAGTCCATGGTCCTGGAGCTGAATGCCTCAGATGACCGAGGC
ATTGGGATTGTGCGCGGTCAAATCCTTAACTTCGCGTCCACACGCACCAT
TTTCTGCGACACCTTTAAGCTGATCATTTTGGACGAGGCCGATGCCATGA
CCAACGATGCCCAGAATGCCCTGCGCCGCATAATTGAGAAATATACGGAC
AACGTGCGCTTCTGTGTGATTTGCAATTATTTGAGCAAAATCATTCCGGC
CCTGCAGTCGCGTTGCACCCGTTTTCGGTTCGCTCCATTATCCCAGGATC
AGATGATGCCGCGACTAGAAAAAATCATCGAAGCCGAAGCTGTTCAGATA
ACTGAGGACGGCAAGCGGGCACTGCTGACCCTGGCCAAAGGTGATATGAG
AAAGGTCTTGAACGTCCTGCAGAGTACCGTGATGGCATTTGATACGGTCA
ACGAGGATAACGTCTACATGTGCGTGGGCTATCCGTTGAGGCAGGATATT
GAACAGATATTGAAGGCCTTGCTATCTGGCAGTAGCTTGGAGGACTCCTT
CAAAACTGTCGAAAGTGCCAAGTACGCAAGAGGTCTCGCTCTGGAAGACA
TCATTACAGAATTGCATTTGTTCGTTATGAGACTTGAGCTGCCTATGTCG
GTCATGAACAAGCTTATTGTAAAGCTAGCTCAGATCGAGGAGAGATTGGC
CAAAGATGTACAGAAGTGCTCAAACTGCAGCTCTGGTAGCCGCTTCTTTA
TTTGCGAGATATGGTTTCAATGGAGAAGCAAGCTTTCTAGGACATTCGTT
TGGCGCCGCGGCCCAGTAGTGTCATATTCATATCATATCTATC
FMO04705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC3-RA | 1134 | CG5313-RA | 76..1071 | 37..1028 | 4745 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10419480..10419930 | 140..590 | 2195 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10419992..10420205 | 592..805 | 1040 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10420401..10420549 | 884..1028 | 545 | 97.3 | Plus |
| 2L | 23513712 | 2L | 10420268..10420345 | 806..883 | 360 | 97.4 | Plus |
| 2L | 23513712 | 2L | 10419358..10419423 | 74..139 | 330 | 100 | Plus |
| 2L | 23513712 | 2L | 10419265..10419303 | 37..75 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:30 has no hits.
FMO04705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:54 Download gff for
FMO04705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 76..1071 | 37..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:32 Download gff for
FMO04705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 55..1050 | 37..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:32 Download gff for
FMO04705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 76..1071 | 37..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:32 Download gff for
FMO04705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10420401..10420549 | 884..1028 | 97 | == | Plus |
| 2L | 10419359..10419423 | 75..139 | 100 | -> | Plus |
| 2L | 10419480..10419930 | 140..590 | 99 | -> | Plus |
| 2L | 10419991..10420205 | 591..805 | 98 | -> | Plus |
| 2L | 10420268..10420345 | 806..883 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:54 Download gff for
FMO04705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10420268..10420345 | 806..883 | 97 | -> | Plus |
| arm_2L | 10419359..10419423 | 75..139 | 100 | -> | Plus |
| arm_2L | 10420401..10420549 | 884..1028 | 97 | == | Plus |
| arm_2L | 10419480..10419930 | 140..590 | 99 | -> | Plus |
| arm_2L | 10419991..10420205 | 591..805 | 98 | -> | Plus |
