FMO04712.5prime Sequence
794 bp (794 high quality bases) assembled on 2008-08-08
> FMO04712.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCCGAAAGTTC
TGCGTGGGAGGCAACTGGAAGATGAACGGCGACCAGAAGTCCATCGCCGA
GATCGCCAAGACCCTGAGCTCGGCCGCCCTCGACCCCAACACGGAGGTGG
TCATCGGCTGCCCGGCCATCTACCTGATGTACGCCCGCAACCTGCTGCCC
TGCGAGCTGGGTCTGGCCGGCCAGAATGCCTACAAGGTGGCCAAGGGCGC
ATTCACCGGCGAGATCTCCCCTGCGATGCTGAAGGACATCGGCGCCGACT
GGGTGATCCTGGGACACTCGGAGCGTCGCGCCATCTTCGGCGAATCGGAC
GCCCTGATCGCCGAGAAGGCCGAGCACGCCCTGGCCGAGGGCCTCAAGGT
CATCGCCTGCATTGGTGAGACCCTGGAGGAGCGCGAGGCCGGCAAGACCA
ACGAGGTGGTGGCCCGCCAAATGTGCGCCTACGCCCAGAAGATCAAGGAC
TGGAAGAACGTGGTGGTGGCCTACGAGCCCGTCTGGGCCATTGGCACCGG
CCAGACCGCCACACCCGATCAGGCTCAAGAGGTCCACGCCTTCCTGCGCC
AGTGGCTGAGCGACAACATCTCCAAGGAGGTGTCCGCCAGCCTGCGCATC
CAGTACGGTGGATCCGTGACCGCCGCCAACGCCAAGGAGCTGGCCAAGAA
GCCCGACATAGATGGCTTCCTGGTCGGAGGCGCCTCCCTGAAGCCCGAGT
TCGTGGACATCATCAACGCCCGGCAGGCAAGCTTTCTAGACCAT
FMO04712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpi-RC | 1268 | CG2171-RC | 262..1004 | 34..776 | 3715 | 100 | Plus |
| Tpi-RB | 1112 | CG2171-RB | 106..848 | 34..776 | 3715 | 100 | Plus |
| Tpi-RA | 1374 | CG2171-RA | 368..1110 | 34..776 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30133509..30134048 | 573..34 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 30133245..30133451 | 776..570 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:31 has no hits.
FMO04712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:22 Download gff for
FMO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpi-RA | 363..1115 | 28..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:10 Download gff for
FMO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpi-RC | 223..975 | 28..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:31 Download gff for
FMO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpi-RA | 363..1115 | 28..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:31 Download gff for
FMO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30133240..30133448 | 573..782 | 99 | <- | Minus |
| 3R | 30133510..30134053 | 28..572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:22 Download gff for
FMO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25958962..25959170 | 573..782 | 99 | <- | Minus |
| arm_3R | 25959232..25959775 | 28..572 | 99 | | Minus |
