FMO04714.5prime Sequence
926 bp (926 high quality bases) assembled on 2008-08-08
> FMO04714.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACACGAACT
CGGTGAGTCCCCTTCCGCCGATGGAGGAGGCCATGGACAGGGTCAGCGAG
AAGTCGCCCCCGGGAACTCCCAATGGCATCGAGATGCCCCCGCCGCCGGA
TGAAAAGCGCTATGAGGAGGATCCAGATAATGCCTGGAATTGCTGCTCCT
GGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCTGCTGGTGGGC
GTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCGATGGCTTCGC
CTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCCATCCTCATGA
TTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGATCTATCGTCTG
TGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACATGTTCTTCCA
CGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCCGTCTTCGCTT
CCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCACTCGTGGCTG
GGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGATCGGCTTCTT
CAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTACAGCTGCCGCT
CGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAACTTCTGGCTG
GCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGCGCGAAACCGT
CAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAGCACTACATCA
CCAGTGCCATCGGCGTGACCCTGATCTTCATTGGGCATCATCGTCACCTT
CGCGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAGGTCTACGTCACGG
AGCGCATTGCAAGCTTTCTAGACCAT
FMO04714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RA | 1994 | CG8776-RA | 373..1244 | 36..908 | 4340 | 99.9 | Plus |
| nemy-RB | 1804 | CG8776-RB | 304..1054 | 157..908 | 3735 | 99.9 | Plus |
| nemy-RC | 1601 | CG8776-RC | 101..851 | 157..908 | 3735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661196 | 380..157 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 12660678..12660900 | 603..381 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12660457..12660630 | 768..595 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12660247..12660387 | 908..767 | 660 | 99.3 | Minus |
| 2R | 25286936 | 2R | 12667834..12667955 | 157..36 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:22 has no hits.
FMO04714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:48 Download gff for
FMO04714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 369..1242 | 33..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:33 Download gff for
FMO04714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-RA | 369..1242 | 33..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:24 Download gff for
FMO04714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 371..1244 | 33..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:24 Download gff for
FMO04714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12667835..12667957 | 33..156 | 99 | | Minus |
| 2R | 12660247..12660385 | 769..908 | 99 | <- | Minus |
| 2R | 12660457..12660621 | 604..768 | 100 | <- | Minus |
| 2R | 12660678..12660900 | 381..603 | 100 | <- | Minus |
| 2R | 12660973..12661196 | 157..380 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:48 Download gff for
FMO04714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8555340..8555462 | 33..156 | 99 | | Minus |
| arm_2R | 8547752..8547890 | 769..908 | 99 | <- | Minus |
| arm_2R | 8547962..8548126 | 604..768 | 100 | <- | Minus |
| arm_2R | 8548183..8548405 | 381..603 | 100 | <- | Minus |
| arm_2R | 8548478..8548701 | 157..380 | 100 | <- | Minus |
