FMO04715.5prime Sequence
1240 bp (1041 high quality bases) assembled on 2008-08-08
> FMO04715.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTATGATCT
CGACATGGAGACCTCCTTTAATTCGCTGTGGGAAACCTGTATCTTGCGTC
AGTCAACTGGGGCAAACGATATCGATGAGAGCGAGTTGAACCAGGAGTAT
TTGAAGGAGGGATCCGTGTTTGTGCACAACACTGATGTGGATGGCAAGCC
GTTGTTGGTATTCCGCGTTAAGATGCACAGTAAGTCCAAGAACCTGGACG
AACTGATACGCATCGTGGTGTACTGGGTGGAAAGGACTCAGAGGGAGCAG
CATCTGACCCAGTTGACCATATTCTTCGACATGTCGGGCACGAGTTTGGC
CTCCATGGATCTGGAGTTTGTGAAACGCATTGTGGAGACATTTAAGCAGT
TCTATCCCAATAGCTTGAACTACATTTTGGTATATGAACTGGGCTGGGTA
CTAAATGCTGCTTTTAAGGTCATCAAGGCGGTGCTGCCACCCAAAGCGGT
TGAGATTTTAAAAATGATATCGAAAAAGGACATCAACCAGTACATTAACA
AGGATAACTGCCTGGCCATCTGGGGTGGCGAGGATAACTACGAATTTAGC
TTTGTGCCGGAGGCTAAAAAGGTCATTTCCAAACCGGTGGCTGCCAATGC
TGGCGATGATGACCAATTCGCGGACAAAAAGGTCACCTTTGTCGATTCCG
CTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCC
GAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAA
GAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGA
CGTACAAGATCCAAACCACATCGCCCGGAGAAGTTCCGTGTGCGACCACG
TTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGA
AGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAGTTCCTGGTGATGG
CTATGGTCCGCGCAGGCGGTGAATGCGGTGGCGCGATGTGACGGCTGTGG
CGGACAAATCCCCACATCTGCGGATGGTGGAGCAGCATCGACTGGTCTGC
CGCTCGATGAGAACAATCCAAAGCGCCAAGCTAGATTGGCCCAAGCAGTT
CAGTAGGGCAAGCGTGGATTGGCACAGAGTCCGGGGCTGGGGATAGATCA
GCTACGGAATTGAACCTCATTGACTTTACCACAACACCTG
FMO04715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RF | 2574 | CG33523-RF | 403..1576 | 40..1207 | 5275 | 97.5 | Plus |
| Vap-33B-RD | 2574 | CG33523-RD | 403..1576 | 40..1207 | 5275 | 97.5 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 403..1044 | 40..681 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5924905..5925322 | 40..457 | 2090 | 100 | Plus |
| 3L | 28110227 | 3L | 5925400..5925626 | 457..683 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 5928702..5929020 | 857..1171 | 860 | 91.6 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 754..858 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5928222..5928297 | 680..755 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:29 has no hits.
FMO04715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:22 Download gff for
FMO04715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RD | 205..1314 | 31..1138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:24 Download gff for
FMO04715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RD | 203..1312 | 31..1138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:41 Download gff for
FMO04715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RD | 396..1505 | 31..1138 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:41 Download gff for
FMO04715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5925401..5925624 | 458..681 | 100 | -> | Plus |
| 3L | 5928224..5928296 | 682..754 | 100 | -> | Plus |
| 3L | 5928537..5928640 | 755..858 | 100 | -> | Plus |
| 3L | 5928704..5928987 | 859..1138 | 94 | | Plus |
| 3L | 5924898..5925322 | 31..457 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:22 Download gff for
FMO04715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5917998..5918422 | 31..457 | 99 | -> | Plus |
| arm_3L | 5918501..5918724 | 458..681 | 100 | -> | Plus |
| arm_3L | 5921324..5921396 | 682..754 | 100 | -> | Plus |
| arm_3L | 5921637..5921740 | 755..858 | 100 | -> | Plus |
| arm_3L | 5921804..5922087 | 859..1138 | 94 | | Plus |
