FMO04718.5prime Sequence
1264 bp (902 high quality bases) assembled on 2008-08-04
> FMO04718.5prime
GCATACATAAAACGAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTG
TCGCGTTCCCTGCTAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTT
TACCTTGATTGCTGGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCT
CCAGCATTGCGCCGCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTC
AGCGATTCCCAGGTGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGG
GTTGAAGCATGATCATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGA
AGAAGGAGGTACGCATCCTCTGCTGGGTGATGACCAATCCCACAAACCAC
AAGAAGAAGGCTCGCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACAT
CTTGCTCTTCATGAGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGC
TCGACGTGGGCGAGGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCG
TTCAAGTACGTCTATCATCACCACTATAACGACGCCGACTTCTTCTACAA
GGCCGATGACGACACTTACGCCGTGATCGAGAACATGCGGTATATGCTCT
ATCCGTACAATCCCGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCC
TTCGTGAAGCAGGGCTACATGTCCGGCGGAGCGGGCTACATACTCAGTTC
GGGAGGCCCTGCGTCGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATG
TGCCTGCCGGGCACGGTGGTCAACGAGGACATCGAAATCGGGCGATGCAT
GGAGAACCCTGAACGTCACCGCCAGGCGATTCCAGGAGACGAATCGGGTC
GCGGGTCGCATGTTTCCCTTCATACCGGAGCATCACTTGGATCCCCACCA
AGGCGAATAAAAACTTTTTGGTACTGGAACTACCTTTACTACAAGAGGAA
TGACGGGTCTCGAATTGCTGCTCGGAATTGGCCATCTCTCTTTCACTACG
TAACCTCCGAATTTCTTTCTTAGTCCTGGACTATCTTCATCTAACCACTT
TGAAACCCCATCCGCCTACCTGCCAATCCCTGGCAGCCCTCTGCCCCGCC
CAACCTCTAAGAGTGGGCTACGTTTCTCTCCCCGCCCTCCCGGGGGGAGA
GGGCTAGGGGGGGCGCCTGGGCCAGTTAACTGGGATTCCCGCCGTTGTAT
CACGATGGGATATCTAATTCAACACTCCGCAACCGTAAAGAACGCTAGAG
GGGGAGCTCCGCTC
FMO04718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1395 | 30..1096 | 4580 | 96.6 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1207 | 30..1096 | 4580 | 96.6 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..1159 | 72..1096 | 4370 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160054..8160931 | 955..71 | 3955 | 98.3 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 753..318 | 660 | 77.3 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 72..30 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:53 has no hits.
FMO04718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:16 Download gff for
FMO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 150..1196 | 20..1083 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:35 Download gff for
FMO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 145..1191 | 20..1083 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:35 Download gff for
FMO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 150..1196 | 20..1083 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:35 Download gff for
FMO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160051..8160929 | 73..955 | 98 | <- | Minus |
| 2R | 8161033..8161086 | 20..72 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:16 Download gff for
FMO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047556..4048434 | 73..955 | 98 | <- | Minus |
| arm_2R | 4048538..4048591 | 20..72 | 92 | | Minus |
