FMO04722.5prime Sequence
900 bp (598 high quality bases) assembled on 2008-08-08
> FMO04722.5prime
CCTTATACGAAGTTATCAGTCGACATGAACCAGTATGGTCTGTCCGTGGT
GGACGACTTCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTC
GAAGCATGTACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAAC
CAGACGCCCGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAA
GATCAAGTGGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATC
TGACCAATCAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGAT
AATGGCATCTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGT
CGCTTGTTATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATC
CCCAAAAGGATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAAC
TGGGATGCGCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGG
AACCACAGTGGCAGATATTGAGCCCAAGTTTGATCACCTGATATTCTTCT
GGTCTGACATTCGGAATCCCCAGAAGTGCAGTCCGCTCACCGTACCCGCT
AAGCCATCACCGTCTGGTACTTCGATGCCAAAGAACGCGAGGAGGCCCTC
ATTAGGGACAAGCTGGAAAAAACAAGACTAACAATCTGGCAGCTCAGCCC
AAGCCCAACAGGCTGAATCCAGACTCCACCACCACACCACCCCGCAGTAC
CAGCTTCATCCGCATCCCAGTCTGCCGGTTAGCATGTTCACGGGAACCGG
AGCGCTGATCGCCCATGTGTCAGTAATTCCTGCGCCCCATCAATGAAATA
TGACGGCAAGCTTTCTAGACTATCGTTGGTATGCGGGCACAGATAGTGGC
FMO04722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hph-RD | 3171 | CG44015-RD | 1120..1958 | 15..852 | 3750 | 97 | Plus |
| Hph-RC | 2496 | CG44015-RC | 1120..1958 | 15..852 | 3750 | 97 | Plus |
| Hph-RA | 2337 | CG44015-RA | 734..1572 | 15..852 | 3750 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5267461..5267816 | 482..836 | 1250 | 94.4 | Plus |
| 3R | 32079331 | 3R | 5266792..5267032 | 21..261 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 5267262..5267402 | 342..482 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 5267117..5267202 | 258..343 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:35 has no hits.
FMO04722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:55 Download gff for
FMO04722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RB | 289..1136 | 7..855 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:15 Download gff for
FMO04722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RB | 289..1136 | 7..855 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:30 Download gff for
FMO04722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RA | 729..1576 | 7..855 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:30 Download gff for
FMO04722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5266782..5267032 | 7..261 | 98 | -> | Plus |
| 3R | 5267121..5267201 | 262..342 | 100 | -> | Plus |
| 3R | 5267263..5267402 | 343..482 | 100 | -> | Plus |
| 3R | 5267462..5267836 | 483..857 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:55 Download gff for
FMO04722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1092504..1092754 | 7..261 | 98 | -> | Plus |
| arm_3R | 1092843..1092923 | 262..342 | 100 | -> | Plus |
| arm_3R | 1092985..1093124 | 343..482 | 100 | -> | Plus |
| arm_3R | 1093184..1093558 | 483..857 | 92 | -> | Plus |
