FMO04726.5prime Sequence
1210 bp (1046 high quality bases) assembled on 2008-08-08
> FMO04726.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCTGCA
ATGTGTCACAAAACCCAAAATGTGGTTGGGCCTTAAGCAGATACTTCTCT
ATGTAGGCCTGTTGCTCTGCGTTCTTCTGCAGGTCTGCAGAAGCAAGACC
CAGTCGCAGATGTTTTGCCCCACTGTTTGCCACTGTGATCTACACGCCCA
GCGCAATCGCGCAGTATGCAGCGCAAAGCGCTTGATAAGCGCCAATATAG
AAATACCTACAACGGTTGAGCTGTTGGACCTGAGCTACAATGATATAACC
ACCATTGACGATGACTCCTTCAAAACCACAATCCACCTGCTTAATCTTAC
GTTGGCCCACAACGCGATACACACACTTTATGGGGATGCCTTTGTGGAGT
TGACCAGACTACGCTACTTGGATCTATCGTACAATCGCCTGGAGCAGATC
GATGAACATATCCTGGAATCCAACAACCAACTGATCCACCTTAATTTGGA
AGGCAACAAGTTGTCCACATTGGGAAAAGGACCTATATTAAGAAGTCCAT
CGCTACGCTCTCTCAATCTGCGCAACTCGCAGGTAAATCAACTTGGAACC
CAGCTTCTGAGTGCCTTGCCTCAATTGCGCCAACTGGATTTGGCACAGAA
TCTACTGTTAACCCTGAGTCCTGGAGATTTTCATGCACCCCGCAATCTGG
CGTCACTGAATGTTGAGGAAAATCCCTTCAACTGCGATCGGGCGTTAGCC
AAAGTGGCCACTGGATTGCGACAGCGCGGAGTGGCTATTTTCATGAGCAA
CTGCATGGAAGAAGAGGTTCACGATCACCAGGACGATGCGGAAGCTGTGA
ATTTTCCTAATAAAAACGAGAAGTCGAAAGCATGGAGTACTTGGAGCCCA
GCACCCGAGGACCCCATCCGTGCTGTCCGTCTGGCGGGATCTGGACTCCA
GTGAGGAGCAGACAGCTCGCAGACGACGAGCAGATGTCATCGCTAGCGAT
GTGTGTGAGGAAGTCGGGAGAACTGTGCTAGATCGCATTTGCTTGGAGCG
TGTGAGTCATGACTCTGGCTGGCGGAACTCCCAATGGAAGATGAATCATA
CCACACGCCAACTTACGATGAGATGATTGAGCCTGCTGTGGGTGGCGGGT
CCAGGGCGATGCATGCATCTTCTACATTACTTCGGCCTGGTGTCTCTTAG
GAATGTCGCT
FMO04726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18480-RC | 4656 | CG18480-RC | 111..1215 | 40..1128 | 5015 | 97.9 | Plus |
| CG18480-RB | 2754 | CG18480-RB | 192..1296 | 40..1128 | 5015 | 97.9 | Plus |
| CG18480-RA | 2287 | CG18480-RA | 111..1215 | 40..1128 | 5015 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15630661..15631409 | 325..1062 | 3240 | 98 | Plus |
| 2L | 23513712 | 2L | 15630193..15630374 | 40..221 | 910 | 100 | Plus |
| 2L | 23513712 | 2L | 15630436..15630543 | 217..324 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:16 has no hits.
FMO04726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:51 Download gff for
FMO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18480-RA | 104..1200 | 31..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:28 Download gff for
FMO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18480-RA | 103..1199 | 31..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:11 Download gff for
FMO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18480-RA | 104..1200 | 31..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:11 Download gff for
FMO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15630186..15630374 | 31..221 | 97 | -> | Plus |
| 2L | 15630441..15630543 | 222..324 | 100 | -> | Plus |
| 2L | 15630661..15631465 | 325..1113 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:51 Download gff for
FMO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15630186..15630374 | 31..221 | 97 | -> | Plus |
| arm_2L | 15630441..15630543 | 222..324 | 100 | -> | Plus |
| arm_2L | 15630661..15631465 | 325..1113 | 97 | | Plus |
