FMO04727.5prime Sequence
1198 bp (859 high quality bases) assembled on 2008-08-08
> FMO04727.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGAACA
CCACAATGCTGGCTAATATTAGCCTAAATGCAACCAGAAATGAGGAGAAT
ATCACCTCATTCTTCACCGACGAAGAGTGGCTGGCCATCAATGGCACTTT
GCCGTGGATAGTGGGATTCTTCTTCGGCGTCATCGCCATCACGGGATTCT
TCGGCAACCTGCTGGTCATCCTGGTGGTGGTCTTCAACAACAACATGCGC
TCCACCACCAACCTGATGATTGTCAATCTGGCTGCCGCTGATCTGATGTT
CGTAATCCTCTGCATTCCCTTCACGGCCACCGATTACATGGTGTACTACT
GGCCATATGGAAGGTTCTGGTGCCGCAGTGTCCAGTACCTGATTGTGGTG
ACCGCCTTCGCCTCCATTTACACGCTGGTGCTGATGTCCATCGATCGGTT
CCTGGCGGTGGTTCATCCCATTCGCTCGCGGATGATGAGGACGGAGAACA
TTACCCTGATGCCATCGTGACTCTGTGGATCGTGGTGCTGGTCGTTTCGG
TGCCAGGTCCTTCACCCACGACGTGGTGGTGGATTACGATGCAAAGAAGA
ACATCACCTACGGCATGTGCACCTTCACGACGAACGACTTCCTTGGTCCG
CGCACCTACCAGGTCACCTTCTTCATCAGCTCCTACCTGCTGCCCTGATG
ATCATCAGCGGTCTCTACATGCGCATGATCATGCGGCTCTGGCGCCAGGG
AACCGGCGTCCGCATGTCCAAGAGTCGCAGCGCGGTCGCAAGCGGTCACC
CGACTCGTCTCGTGTGTCATCGCTTCGCTCGTCTGGCTGCTGCCAGTCAT
CTGCTGTCAGCACTGGTGCTCAGACGACACCTCCCAGTAGCTCAGGCACG
CAATCTGCTAACACTCTGACATCGTGTCTCCCTCCCCCAAATTCGGAGCT
CTCAGCTATGTCTTCAACAACACATTATTCCCCCGGAGATCTGGCAGCCC
CCTGATCAGTTAACTCTTGGCGGCCGAGGCTACAACAACAACTACAACCA
GACGGTGTGGTGACCCAAACCCGGCAGTTAACAGTTGGTTTGTTAAGCAA
GCATATCCCCGCCCATGATAATCCTGCAAGAATACGCCTTCTTTCGAGGA
TTGTAGCCGGAAACGGCTCTATGATATCTGAGATTCACGAGAGTATGA
FMO04727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-RC | 1994 | CG10001-RC | 756..1568 | 39..840 | 3775 | 98.5 | Plus |
| AstA-R2-RB | 2077 | CG10001-RB | 756..1568 | 39..840 | 3775 | 98.5 | Plus |
| AstA-R2-RA | 2273 | CG10001-RA | 756..1568 | 39..840 | 3775 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28743484..28744027 | 580..39 | 2605 | 99.4 | Minus |
| 3R | 32079331 | 3R | 28740751..28740985 | 809..578 | 1025 | 98.7 | Minus |
| X | 23542271 | X | 3655852..3655904 | 417..469 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:58 has no hits.
FMO04727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:50 Download gff for
FMO04727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 751..1558 | 34..831 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:42 Download gff for
FMO04727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 102..909 | 34..831 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:21 Download gff for
FMO04727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-R2-RA | 751..1558 | 34..831 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:21 Download gff for
FMO04727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28740724..28740984 | 579..831 | 96 | <- | Minus |
| 3R | 28743486..28744040 | 34..578 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:50 Download gff for
FMO04727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24566446..24566706 | 579..831 | 96 | <- | Minus |
| arm_3R | 24569208..24569762 | 34..578 | 97 | -> | Minus |
