FMO04729.5prime Sequence
1204 bp (1049 high quality bases) assembled on 2008-08-08
> FMO04729.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATTGACGCG
GCTTCCGCCGAGCGGGCAAGCCCCCAGTTTATTGCCCTCTTCAATGACAA
TCTGAAACTGGGCCACGAGGACGACGGCCCACAGGCAGTCAATGGAAAGG
ACACCCACCAGCACGTACCCGCCGACCTGGAGGCGACCTATGGAACCTTG
TACGCCGCCTGCCAGGATCACGCCGCCTTCTTTGCCCGGGACCACACCGA
ATTCGGCCAGCGCCTGCATGCCGCCCACATTGCCTGGCAGGACTTCATTG
TCTTGGCCAACCGACTGGTCCAGCAGATCGATGCCTTCGCCCACGAGTAC
GATTTTGACGAGCAGACGCCGGGCAATGGATACAGGAGCTTCATCTACGT
GACCAACGCCTGCATCGCGCATGGCATTAGCATCTGCCAGCAGCTGACAG
CCACCCGTTCCACCATATTCTTCCGCAAGAAGTTCTACATGAAGGAGGTT
GAGGCCTGTTCCCAGCTGTTGTCGTCGCTGTGCACATGTCTGCAGTACCT
GCTGATCCTTCGCCAGTGGTCGGCTAGCACGGGTGATCTGTTCGCATGCG
GAAATCACACTGCCGAGCAGCTCTTCGAGCTGGGCGACACCATCAACCAG
TATTGCTTTTACGGACGCTGCCTGGGCTTTCAGTATGGCGACTCGATACG
CGGAGTTCTCCGATTCCTCGGCATCAGCATGGCCAGCTACTCGGAGTCGT
ACTATTCGCAAGAGGGCGACGGCCCCATCGTTAAGACCACACGCAGCCTG
TGGACCAGCGGCAAGTATCTTATGAATCCGGAACTGCGCGCCCGTCGCAT
CGTTAACATCTCGCAGAATGCTAAGATAGACTTTTGCAAATCCTTTTGGT
TTCTGGGCCGAGTCCGAGATGATGCACAAGCTGCCCAGCATTGTGGGCAG
CTCCATTTAGTAAACCGGCTCATCGATTGCCAGCCGAGCCGCTAAAGCTG
CTCGCGAAGAATTCAGGCATCGGACATCTCAGCAGTGACGTAACCAAACA
GGCATGGTGATTTGGTGGAGATCCGGTGCCACGCACATTTGGGACTGTTT
ACGGTCTCTGTTCGCTGCTGAACGCGGACACGTCCGGAATGCTAGCCAGG
TGCATCCGGTCTGCCAAGCATCCGCCAGCTCTCTCGATTCTGTATACAAT
GCCC
FMO04729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsl-RC | 3613 | CG11055-RC | 201..1327 | 39..1143 | 4975 | 97.4 | Plus |
| Hsl-RA | 3554 | CG11055-RA | 142..1268 | 39..1143 | 4975 | 97.4 | Plus |
| Hsl-RB | 3522 | CG11055-RB | 110..1236 | 39..1143 | 4975 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20258193..20259156 | 39..1001 | 4660 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:23 has no hits.
FMO04729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:37 Download gff for
FMO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsl-RB | 106..1229 | 31..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:40 Download gff for
FMO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11055-RC | 192..1320 | 31..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:54 Download gff for
FMO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsl-RB | 106..1229 | 31..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:54 Download gff for
FMO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20258184..20259312 | 31..1137 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:37 Download gff for
FMO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16145689..16146817 | 31..1137 | 97 | | Plus |
