Clone FMO04730 Report

Search the DGRC for FMO04730

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:47
Well:30
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNpc2g-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04730.5prime Sequence

532 bp (532 high quality bases) assembled on 2008-08-08

> FMO04730.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGCGTCCTA
GCTCGCTGCAGGCTGTCGCCATCGCCATCGTCCTGATCTCGTCATCCGCT
TCCGCCGAGGTGGTCAACTTCGAACCATGTCCGGATAGCGTAGACACCTG
TACGATCCAGCAGGTGAGAGTCTCGCCATGTCCGGAGGCCCTCAACAATG
CGGCTTGCAATATCCGCCGGAAGCACAACAGTGAGATGAGCTTCGACTTC
ACGCCGAACTTCGATGCCGACACCCTGGTAGCCAGCTTGGGCTGGGCCAA
GAGCGAGAATGTGGAGCTGCCCCTGCTCACCTTGGACAGCGCCGCCTGCA
AGTACACACCCTGCCCCGTGAGATCCGGAGTGAAACAGACCTACACCACC
CTGGTGCCCATCGAGGCCAAGTTTCCCCTGAGTCCGTACACCATCCGTTG
GGCTCTGAAGGATCCCGTCTCCCAGAAGCGCTGCTGCTTCACCATCGACA
TTAAGGTGGTGCGCGCAAGCTTTCTAGACCAT

FMO04730.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 592 CG11314-RB 30..507 37..514 2390 100 Plus
Npc2g-RA 659 CG11314-RA 30..507 37..514 2390 100 Plus
Npc2h-RC 597 CG11315-RC 78..501 91..514 875 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30744757..30745234 514..37 2390 100 Minus
3R 32079331 3R 30745790..30746213 514..91 875 80.4 Minus
Blast to na_te.dros performed on 2014-11-28 20:03:34 has no hits.

FMO04730.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:13 Download gff for FMO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..507 33..514 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:44 Download gff for FMO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11314-RA 23..505 33..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:00 Download gff for FMO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..507 33..514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:00 Download gff for FMO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30744757..30745239 33..514 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:13 Download gff for FMO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26570479..26570961 33..514 99   Minus