FMO04734.5prime Sequence
1231 bp (1023 high quality bases) assembled on 2008-08-08
> FMO04734.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGAAGTTC
TGCTCGCTGCGAAGGAGCAAGGAGCCAGCGATTGTGGCTCCCAAAGTGGC
CAAGAGTTCATCGCTGCGCCTGAAGGATGTCCCGCTGAATGACGCCCAAC
TGCTCCAAGTGCTCCATGCCCAGCGGGAGCGAGGACCTCTGATTTTGGCC
CTGAGCAGTGCGAAAAATTCAGTGCAAACTTGCCGGAAGTGCGGAACCCC
CTACGAAAACCGTCAGGTGGTCGAAAACGGAACAACAGCCCGTCCGTCGT
ACAAGAGCAACGGATACGTCTCAGAGCCCGAGCCCAACTACGATTCGGAT
TACTCGACGGTGAGGTACCGCACCCAGAATCCGCACCGCGTTCAGTCCGT
CTCCTCGGCTGTCAATGTGCGCAACCTTAATCAGGACGAGAAGTTGTATG
GTACTATGCCAAATCCCATAAAATCAGCGCAAAACTCGTATAAGAATCAG
CCAGGTCGCATCGAAAACTATACGACAGGTCATTCGTCTGTTTCCGAAAA
GGAAAAGAAGGAGTGGTGGGACGAAGTGATGGACATCTTTAACGGGAATC
TAGAACAATCGAAACTATCGCCATTGTACACTGAAGGTAACTTGTCCAGA
GCTTTGGCCAAGGAATCCGGCTATACTAGCGATTCCAATCTGGTCTTCCG
TAAGAAGGAGGTACCCGTGAGCAGTCCCCTTAGCCCCGTTGAACAAAAGC
AGGCTTACAAGAGTCTCCAGGCAGGGGGAGAGCCACCTCTGCTCGGCTTC
CGTAAACCAGCGCCCGAGAAACCCCGTGATCTCGACCCGAACGCGCCCCC
CATTCCCCCACAGCCACCAAGTCAAGGGTCTCTCCTCCTACGATTTCCCG
TACAGCACCGACACGGTCGACGGATCAGACGTGAACATCCACTTCAGGAC
CCCATCAGGCATGAGCAGGCGTCAGAACTTGTCGGAGGGGACTAGCCATT
CGCCAAGGCGGGAGCACATGCAGAGGCTCTTACACGGAGGGGGCGGCGGT
CGCAGTATTCTACAGGAGCTGCAGGACTGGATTCCGCGGCCGCCACACGG
ACAACTCACCCGGTCGCGAAGTCGCCATCGGCCTTCAATCCGTACGAAGG
ACTCCAACGGAACGTGACTTAGGTCCTGGGTGGCCTGAGAAGCGGACGGG
ACTCTTAACTTCCCAGGGACGGACACTCGAT
FMO04734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RI | 2663 | CG18408-RI | 27..1138 | 33..1147 | 4945 | 97.2 | Plus |
| CAP-RV | 8693 | CG18408-RV | 6311..7168 | 287..1147 | 3675 | 96.3 | Plus |
| CAP-RU | 2872 | CG18408-RU | 490..1347 | 287..1147 | 3675 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10295866..10296047 | 647..828 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 10294609..10294767 | 286..444 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 10294846..10294966 | 443..563 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 10269262..10269362 | 108..208 | 505 | 100 | Plus |
| 2R | 25286936 | 2R | 10300489..10300588 | 828..928 | 440 | 98 | Plus |
| 2R | 25286936 | 2R | 10269420..10269501 | 207..288 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 10269042..10269116 | 33..107 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 10295741..10295794 | 596..649 | 270 | 100 | Plus |
| 2R | 25286936 | 2R | 10304621..10304797 | 926..1106 | 260 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:20 has no hits.
FMO04734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:55 Download gff for
FMO04734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 22..1138 | 25..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:36 Download gff for
FMO04734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 15..1131 | 25..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:46 Download gff for
FMO04734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 22..1138 | 25..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:46 Download gff for
FMO04734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10269037..10269116 | 25..107 | 95 | -> | Plus |
| 2R | 10269262..10269362 | 108..208 | 100 | -> | Plus |
| 2R | 10269422..10269501 | 209..288 | 100 | -> | Plus |
| 2R | 10294612..10294765 | 289..442 | 100 | -> | Plus |
| 2R | 10294846..10294966 | 443..563 | 100 | -> | Plus |
| 2R | 10295291..10295323 | 564..596 | 100 | -> | Plus |
| 2R | 10295742..10295794 | 597..649 | 100 | -> | Plus |
| 2R | 10295869..10296047 | 650..828 | 100 | -> | Plus |
| 2R | 10300490..10300588 | 829..928 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:55 Download gff for
FMO04734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6156542..6156621 | 25..107 | 95 | -> | Plus |
| arm_2R | 6156767..6156867 | 108..208 | 100 | -> | Plus |
| arm_2R | 6156927..6157006 | 209..288 | 100 | -> | Plus |
| arm_2R | 6182117..6182270 | 289..442 | 100 | -> | Plus |
| arm_2R | 6182351..6182471 | 443..563 | 100 | -> | Plus |
| arm_2R | 6182796..6182828 | 564..596 | 100 | -> | Plus |
| arm_2R | 6183247..6183299 | 597..649 | 100 | -> | Plus |
| arm_2R | 6183374..6183552 | 650..828 | 100 | -> | Plus |
| arm_2R | 6187995..6188093 | 829..928 | 98 | -> | Plus |
