FMO04735.5prime Sequence
891 bp (891 high quality bases) assembled on 2008-08-08
> FMO04735.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGGATACAC
GGACCTCACCAAGCTGGAGACAAGTCGAAACTGCCTGCGCCGCATCGCCC
GTCACGATGAGCAGCAGTTCTCCAAAGACAGCATTGTCAATGTGATGGAA
AAGTTTGTAAAGACTGTCAACATTATGGACGACACCATACTGGTGCCATG
CAGGCTCATGGATCGGCAGATCGGCGACAGCACTGACATCATCCCAGCAA
CCGGCAAGGACTCGACCGCCAACCAGCTGACACAGACCTCCAGTGCCCAC
GGCAAGCGGGGAGCGGCGCATTCAAAAAATGTCCAAGACTTTCTCAGCGC
CTCCGAGCTGTTCAATCTGTACAACATGCTGAACTCCCTGAAAAAAGATC
TGCTTTGGACCGCCAACCAGGAGGACGACGACCAGCAGCACTCCGAACAG
CAGCTCAACGCCAGTACCAGTTCCACTTCGAGCTGCAATCCCAGCGAGAG
CAAGACTGAATTCAACAGCGGCAGTCCAAGCACAACCGCATCCGGAAGTG
TCAAGGGTCATGTGCGCCGTACCTCTACCGCATCCATGATGTCCACCAAC
TCGGTGAGCAACATGAGTGACTCTGACTCGGACATATCGCAGGAAAACGA
CTCGGGGCTAGAGTCCGATGGCAACAAGAGCGACAACGCCCAAAGCAGCG
ACGGCAGCGACATTGTAGACGTCGCCAAATCGAAGCCGGGCTCGGGGGAC
AAGGCCACGGAGCTGGCCAAGCGCTGCCGGAGGCATCTTAACGGTCTGTA
CCAGTGCCTGGAACAAATGACAGAGGCGGCCAACTACCTGACCGCCAGAT
ACCAAAGTGATATTGGGCCCGTCGCAAGCTTTCTAGACCAT
FMO04735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-RF | 2310 | CG2765-RF | 457..1301 | 29..873 | 4195 | 99.8 | Plus |
| CG2765-RD | 2648 | CG2765-RD | 843..1639 | 77..873 | 3985 | 100 | Plus |
| CG2765-RE | 2072 | CG2765-RE | 267..1063 | 77..873 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24960850..24961506 | 873..217 | 3285 | 100 | Minus |
| 2R | 25286936 | 2R | 24961606..24961748 | 219..77 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 24964572..24964620 | 77..29 | 215 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:24 has no hits.
FMO04735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:32 Download gff for
FMO04735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 29..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:26 Download gff for
FMO04735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RA | 464..1308 | 29..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:40 Download gff for
FMO04735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 29..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:40 Download gff for
FMO04735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24960850..24961503 | 220..873 | 100 | <- | Minus |
| 2R | 24961606..24961747 | 78..219 | 100 | <- | Minus |
| 2R | 24964572..24964620 | 29..77 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:32 Download gff for
FMO04735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20848373..20849026 | 220..873 | 100 | <- | Minus |
| arm_2R | 20849129..20849270 | 78..219 | 100 | <- | Minus |
| arm_2R | 20852095..20852143 | 29..77 | 96 | | Minus |
