FMO04736.5prime Sequence
1113 bp (1029 high quality bases) assembled on 2008-08-08
> FMO04736.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGTCTGCTACT
CAGAAATTATTCCCTAATGGAGGCCGTCAAAAGATTGCTGCCGAGACCGC
GCAAAAAAATCTACAATCTAGGCGCTTGCTTCGAACTGGTGGATATTCCT
AAGATATCCTACAATCCCAGCGAGCTCTCCGAGCCCCGATTCCTGGAGTA
CAGCAATCTATCCGATAAGCTACACCTAAGGGAAGCCATTGACAAAATCC
TTATACCTCGAGTTGTGGGCACAACAAATCATAGCATCGTTCGAGAATAC
ATCGTCCAGAGTTTGAGGGATCTAGACTGGGATGTGGAAGTAAACAGCTT
TCATGATCACGCTCCCATCAAAGGCAAATTGCATTTCCACAACATCATCG
CCACCCTGAATCCAAATGCTGAGAGATATCTGGTGCTGTCCTGCCATTAT
GATAGCAAATACATGCCTGGAGTGGAATTCCTGGGGGCCACCGACTCGGC
AGTGCCCTGTGCCATGCTCCTCAACCTGGCCCAGGTGCTTCAGGAGCAGT
TGAAACCCCTCAAGAAGAGCAAACTGAGTTTGATGCTCTTGTTCTTCGAT
GGCGAGGAGGCTTTTGAGGAGTGGGGACCCAAGGACTCCATCTATGGAGC
ACGACACCTGGCCAAAAAGTGGCACCATGAAGGAAAACTTGATAGAATAG
ATATGCTGGTGCTCCTGGATCTGTTGGGAGCCCCCGATCCGGCATTCTAC
AGCTTCTTCGAAAACACCGAGTCCTGTACATGCGTATCCAGTCCGTGGAG
ACACGTCTTGCCAAGTTGCAGCTCCTGGAGCGCTATGCCAGTAGTGGAGT
TGCCCAGCGCGACCCCACCCGCTACTTCCAGTCGCAGGCCATGCGATCCT
CTTTCATCGAGGACGATCACATACCCTTCCTGCGGCGAAATGTGCCGATC
TTGCACTCATTCCGGTGCCCTTTCCCAGTGTATGGCATACGCCCGACGAT
ACGCAGCGTGATCGATTATGCGACGACGGACAACTGCACTGAATAAACGG
CTCTTCGCTTTGGGAGTATCTGCTGACGGAACCGAGGCCAAGGCAAGCTT
TCTAAACATCGTG
FMO04736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| isoQC-RB | 1617 | CG5976-RB | 62..1123 | 37..1092 | 5040 | 98.8 | Plus |
| isoQC-RA | 1975 | CG5976-RA | 535..1481 | 152..1092 | 4465 | 98.6 | Plus |
| CG5969-RA | 947 | CG5969-RA | 683..799 | 37..153 | 585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20475563..20476509 | 152..1092 | 4290 | 98.3 | Plus |
| 3L | 28110227 | 3L | 20474527..20474643 | 37..153 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:46 has no hits.
FMO04736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:32 Download gff for
FMO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isoQC-RB | 53..1123 | 27..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:13 Download gff for
FMO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5976-RB | 53..1126 | 27..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:06 Download gff for
FMO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isoQC-RB | 53..1123 | 27..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:06 Download gff for
FMO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20474518..20474643 | 27..153 | 97 | -> | Plus |
| 3L | 20475565..20476509 | 154..1092 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:32 Download gff for
FMO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20467618..20467743 | 27..153 | 97 | -> | Plus |
| arm_3L | 20468665..20469609 | 154..1092 | 98 | | Plus |
