FMO04738.5prime Sequence
1240 bp (985 high quality bases) assembled on 2008-08-08
> FMO04738.5prime
TAACTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGTGGAC
CGCAACAGTGGAGTTCAATACGAAAGAATGCCGACTGTTACTTTCAGTAA
CCTGCAGGGAACAGCGAGCGGCAGCACAGCGACCATAAATTTCCAGAGTG
GAGCCACCAGTGCCAGGAATGGATCCACGGCCTTTTTCGACAATGGGGCC
AAGAGCTTTCAGGCCAAGCAACAAAAGGATAAGAACCGACGCACTGGCAA
CGATGCCATAAGTTCAGCACTGTCGGCAACCTATTGCAAACTGTTGGTAC
TGCTAGGCGTTTGTCTGCCGATCACGGAAGTTATATCCGATCAGATACCG
ACCTATGTGTACCAGGGATTCTACGTATACCTCTATGTGGGCAGCATACT
CTTTGTGATCTTTCTGTACATTAGTGCCTTCCGTAATCGATCGCTCTTCA
ATGCCTTAAAGGACTATCACGAAAAGAACAGCAATGTGCATCTGAAGCAC
AAGGTAACCCATTTTGGCAGCTTTTACTTGAGAGTGGGAGCCATCGCCTT
CGCCATTGGAACTATGGTGTATTCGGGCCTGGAGTTTGGCCAGTTCTTCG
AGCTGAATGGCCATCCCGGATGCCGGGATGTCTTCGTGGCCATTACACCC
ATCTGCCGGATGGTCCTGTGCATCGCCCAGGTGCAGTTCATCTTCTTGAA
CACCACCTACATGGACATGGCCCGGCACAAGGTGACCTCCCGCTTCGGAC
TCATGCACATGGTGGCCACCAACTTGTGTGAGTGGCTGTACGTCCTGGTG
GAGGAGACCAAGCACGAAATTTTCCACATCAGCCAGCACGAAAGTGGATC
CCGCCCACGACCTGGTCATTCATAATAGCTCCATGAGTAGAACGGACTGG
GCCGCTGTCAATGAGTCCCTGCATCAGCATCATCATCATCATGGCCCTTA
ATAACCACCCTGGTGGCCAATGTGAAGTTCTGGTGATTTGTGAATATGAC
CATTACTCCGTCGCCCACGCCGGCCTGCCCTTCAGCCGCTGCTCCCGCAC
CCAAGAATTATGGGTGCTCTGGTGCACAACTTTCCGCCATTCCTTGTTTC
CCCTGCACAATCGAGTAACTCCCTCATTATGCGCCGGTTATTCCTCTTCA
GAATTGGAAAACGGCTCAATTCAATCCGAAACTCAGACAAAACGCAAGAA
ACTCGATCAGGCGCTGTGCGTACCAGGCAGGCACCATACA
FMO04738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3332-RB | 2216 | CG3332-RB | 172..1279 | 42..1164 | 5055 | 97.7 | Plus |
| CG3332-RC | 2653 | CG3332-RC | 664..1716 | 97..1164 | 4780 | 97.6 | Plus |
| CG3332-RA | 2656 | CG3332-RA | 667..1719 | 97..1164 | 4780 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3276841..3277477 | 1117..469 | 2570 | 96.3 | Minus |
| 2L | 23513712 | 2L | 3277543..3277760 | 468..251 | 1090 | 100 | Minus |
| 2L | 23513712 | 2L | 3277829..3277987 | 250..92 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 3280308..3280363 | 97..42 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:37 has no hits.
FMO04738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:28 Download gff for
FMO04738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 167..1274 | 34..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:13 Download gff for
FMO04738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 166..1273 | 34..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:06 Download gff for
FMO04738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 167..1274 | 34..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:06 Download gff for
FMO04738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3276802..3277477 | 469..1159 | 96 | <- | Minus |
| 2L | 3277543..3277760 | 251..468 | 100 | <- | Minus |
| 2L | 3277829..3277981 | 98..250 | 100 | <- | Minus |
| 2L | 3280308..3280368 | 34..97 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:28 Download gff for
FMO04738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3276802..3277477 | 469..1159 | 96 | <- | Minus |
| arm_2L | 3277543..3277760 | 251..468 | 100 | <- | Minus |
| arm_2L | 3277829..3277981 | 98..250 | 100 | <- | Minus |
| arm_2L | 3280308..3280368 | 34..97 | 93 | | Minus |
