FMO04739.5prime Sequence
1194 bp (1062 high quality bases) assembled on 2008-08-08
> FMO04739.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCACGCGGAG
CTGTATCGCACTCGCAAGCGGTGGTATGAGTCCGCTTGGCCTGGAGCAGG
ATTCTGGCGAGGAGCCAACGACACGCTGCCCGTGACGAACTACATCACGT
ATCCGGCGAATTTCGATCAGCCGGATGGACAATCGCTAACACCCCTGACC
ATGGCCGCGATGATGGGCAATGTGAAATTCGTGAAGACTCTGCTGTCGCA
CTACGACGTCGACTTGGACCGAGAATGCAATGTCATCTACGACGGGATGG
TGGTCTACGGAGCCACAGCCCTGTGGGTGGCTGCCGGAATGGGGCATCTG
CAGATAGTCAAAATGCTCGTCCAAGCGGGAGCGGCCATCAATCACAATAC
CAAGGCGCAGTCGTCGCCGCTGAGAGCGGCCTGCTATGAGGGTCGATTGG
ACATCGTTGAATTCCTAATTGACAATGGCGCTGATGTGAATGCCACGAAT
TTGTTCAACAACAACACGCTTATGATTGCCGCCTACAAGGGTCACCACCT
GGTGGTAAAGACTCTACTTCAGAATGGATCAAGGGCCAATGATCAGGCGC
TGTGCGGCGCCACTGCCTTGCACTATGCGGCCGAAAGCGGTCACCTGGAT
GTGGTGGTAGCCCTGCTTGACCATGGCGCCACTCTGAAGAAGAATGAGCT
GGGAATTACGCCCGCCTTGCAGGCTGCCGAACGTCTCCATGAGGATGTCC
TTGAAGCGTTCATCGAACGACCAGAACTGATGAGCTTGGAGGAGCAGATC
ACAGCATTGGAGCTTCTGGGAGCCACTTATGCGAATGACAAAATCAAATA
CGACGTGAATAAGGCCTATGGCTATCTGCTGAGAGCCATGCAGCTACGTT
ACAGCAATCCACGCGGTGTGATCCGCAAAAGAGTTCAGCCCACTGTGCCC
GCGTATGACATTGGCTTGAGACTGAAATCTGCCCGATTGTATGCCATCAA
ACTTATCACCACTCCATCCACATGGAGTCGCTGCAATAAGGAACGCATTC
TGGCCGCATATCGAGTGCTCAGGCATTATTCTATCGAGGACTGGATGCGA
TCAGGCCAGTTACATGCAGGGCCTTGACTCGCCTAAACTGCAATGCCAAT
TGTATCGTGATGCGGATCCTTAACGGTTCTCGCGAGACTTTTGG
FMO04739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-RB | 2486 | CG9025-RB | 75..1140 | 38..1090 | 4955 | 98.5 | Plus |
| Fem-1-RA | 2679 | CG9025-RA | 389..1333 | 159..1090 | 4350 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20664082..20664678 | 1033..441 | 2785 | 99.3 | Minus |
| 2R | 25286936 | 2R | 20664784..20665069 | 443..158 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 20665364..20665464 | 158..58 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:42 has no hits.
FMO04739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:08 Download gff for
FMO04739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 67..1104 | 27..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:48 Download gff for
FMO04739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 66..1103 | 27..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:57 Download gff for
FMO04739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RB | 67..1104 | 27..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:57 Download gff for
FMO04739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20664082..20664677 | 442..1033 | 99 | <- | Minus |
| 2R | 20664786..20665068 | 159..441 | 100 | <- | Minus |
| 2R | 20665364..20665463 | 59..158 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:08 Download gff for
FMO04739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16551587..16552182 | 442..1033 | 99 | <- | Minus |
| arm_2R | 16552291..16552573 | 159..441 | 100 | <- | Minus |
| arm_2R | 16552869..16552968 | 59..158 | 100 | <- | Minus |
