FMO04741.5prime Sequence
1205 bp (1002 high quality bases) assembled on 2008-08-08
> FMO04741.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTACAAA
ATGCATTAGTTGCTGTGGCCTCGCAATAATCTCGGTTTTTTTCGCCTGCC
TTTTCGTCGAGAATTGCGCGGCCCTGCAAAAGACGCTGCGCCACTACGAA
ATTTTTCACAAGGACGATGTGGTGCACAGGGTGGTGAAAAGGGGTGCCAA
GCACAGCACGAATCCCTTCAACACCATCAAGGAAGTGGAGTTCACCACGC
TGGGCAAGAACTTCCGGCTGATCCTGCATCCGCACAGGGATGTCCTGCAC
AGCAAATTCAGGGCCTACGCCGTGGATGCGGATGGCAACGAAACGGTGGT
GCATATGGATCACGATAGCTTCTATTCGGGTCGGGTGTTTGGCGAACTGG
AGTCCTCTGTGCGTGCCCACATCGAAGACGGTACCATGACCATGTCCATT
CATTTGCCGGAGGAAACCTATCACATTGAGCCCTCCTGGCGACACCTGCC
GGAGGCCAAGAAGGACACCATGGTGGCTTACAAGGCCTCGGATGTGAAAG
TGCACAAGAATGAGGCGGGTGCCACCCCCAAAACCTGTGGCTACATCAAG
GAGGGTCTCGAGCTGGAGGACAAGGAGCACGGTGATACTCTGGACAATGA
GCTGCACACGAGGGAGAAGCGTCAGTCCGATCAGTACGAGTACACGCCCA
CCAAAACCCGGTGTCTCTTGCTCTTGGTGGCAGACTATCGATTCTTTCAG
GAAATGGGTGGTGGCAACACCAAGACCACCATTAACTACTTGATAAGCCT
CATCGATCGGGTGCACAAGATCTACAACGACACTGTGTGGCAGACCGCTC
GGATCAGGAGGGATTCAAGGGCATGGGCTTTGTGATCAAGAAGATCGTGG
TGCACTCGGAGCCCACGAGACTGCGAGGAGGCGAGGCACACTACAATATG
ATCCGTGAGAAGTGGATGTGCGCAATCTCCTGTAGTCTCTCCCGGGAGTA
CAGCACAAAGACTTTGCCTTGCCCATCTCTTTACCGATCTCAGTCGAAGC
GCATTTGGGCTGACTACGTGGCTCCCCCCGTCGCAACTCGGTGCCGCATT
TGGCACTCGGATACTTCAAATTGTACCTCTGTACCTGACTCGGTTTGAAC
GTCGACCAATGTCACGGTCTCACAGGAAGCTGACCTGGTCACCGCGCCTC
ATAAA
FMO04741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tace-RA | 2408 | CG7908-RA | 54..1151 | 40..1120 | 4950 | 97.7 | Plus |
| Tace-RB | 2322 | CG7908-RB | 54..806 | 40..792 | 3750 | 99.9 | Plus |
| Tace-RB | 2322 | CG7908-RB | 859..1051 | 792..982 | 915 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30001024..30001458 | 358..792 | 2160 | 99.8 | Plus |
| 3R | 32079331 | 3R | 30000726..30000966 | 118..358 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 30001511..30001703 | 792..982 | 865 | 99 | Plus |
| 3R | 32079331 | 3R | 30000583..30000661 | 40..118 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 30001829..30001885 | 988..1042 | 185 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:33 has no hits.
FMO04741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:24 Download gff for
FMO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tace-RA | 54..1117 | 40..1089 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:55 Download gff for
FMO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tace-RA | 30..1093 | 40..1089 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:04 Download gff for
FMO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tace-RA | 54..1117 | 40..1089 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:04 Download gff for
FMO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30000583..30000661 | 40..118 | 100 | -> | Plus |
| 3R | 30000727..30000966 | 119..358 | 100 | -> | Plus |
| 3R | 30001025..30001458 | 359..792 | 99 | -> | Plus |
| 3R | 30001512..30001706 | 793..984 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:24 Download gff for
FMO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25826305..25826383 | 40..118 | 100 | -> | Plus |
| arm_3R | 25826449..25826688 | 119..358 | 100 | -> | Plus |
| arm_3R | 25826747..25827180 | 359..792 | 99 | -> | Plus |
| arm_3R | 25827234..25827428 | 793..984 | 97 | -> | Plus |
