FMO04743.5prime Sequence
1192 bp (1064 high quality bases) assembled on 2008-08-08
> FMO04743.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGTTTTG
AGCCTCTGGGCCAGAAAATGTTCACCCGCCGCAATTGGTTGTTGCGCTGC
AGCATCCTTATCAATGTGGCGGTGATCCTGTACATTGGCAGTCAATTGAT
GATCGGCGGCGGCAACAACTTCTCGAACGGCGGTGGCTTCCTGCTGCAGG
AGCAGCAACAGGTGTCAATGATGCAAGTGGGCTCCGCCTCATCAGCGGCC
CAGGTGCAGCAGCAACAGCAGCCCACTCCCAAGAACCAGAACCAGGTGGC
CGAGATCTTCGAGTCCGAGGAAAAGCAGCTGGTCAATGCCAACGCAGATC
CTCCAGCAGCAGCGGCTCAGGTGGCTGATGGCGGTGCTGGAGCCCCGCAG
TTGGCGAACGATAGTGGTGCCGGGGCGGCTGCTCTGGGCGATCCCTCCCA
GGTGATAGGAAACATTGGGCCCGGCGGTGTCGCCGAGGTGAACAATAGCC
AGTCTGACGGCGGCTACATAGTCACAGGCGATGAGAAGGAGCTGGAGGAG
CGTGTGCGATCGTTGATCAACTGCTTCGACCACGACTACCACCAACAGAC
CTTGCAGCGTGGCGACTTCTGGGTGCTGCAGAACTACGTGCGGGCGGAGC
ATGGCGACATCAAGTGCCATGAGTCGATCACCTACACCACGCACGCGGAC
TACACGTTCCTGGACAACCTGGTGCCGCTGTTGGAGCGCTGGAACGCCCC
GGTGAGCATTGCCATGCACGCGCCCGGCACGGACTTCCAGCCCACTCTGG
ACTCGATCCGGTATCTGCGAGAGTGTCTGCCCGGCAGTCACCTGGTGCGC
GCCTATACCACCTTCCACATCTACTTCGGAACCAAGCACATTCCTAAGTC
TGTGCCCAAGCCTCACGAAGTCTTCAGACGGGATACAACTGCACACTTCC
ACCTCCGTACTTCACGTCAGCTCCGGGCACCTGTACAAGCGCAAAGAAGT
GCTGTATCGGTGAACGTGGTCGTAACATGCCGCGACTCGGCACTCACCCA
CTTTATCTGCTTCAAACTTCGAGCTGTATCGGACCGGGCTGTCAGAGTTC
CTCGAGAATGATGCTCGCACGGACAGTACTGGAACGCAAGCACCGAGAAT
TCATGCCACCTCTCAGGTGAAGAGAATTCCCAATTGCCACCA
FMO04743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 3950 | CG9171-RG | 590..1719 | 39..1148 | 5010 | 97.4 | Plus |
| CG9171-RF | 3736 | CG9171-RF | 376..1505 | 39..1148 | 5010 | 97.4 | Plus |
| CG9171-RE | 3129 | CG9171-RE | 430..1559 | 39..1148 | 5010 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5770090..5770888 | 1080..293 | 3440 | 98 | Minus |
| 2L | 23513712 | 2L | 5770951..5771204 | 292..39 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:47 has no hits.
FMO04743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:28 Download gff for
FMO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 423..1500 | 31..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:51 Download gff for
FMO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 320..1397 | 31..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:47 Download gff for
FMO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 423..1500 | 31..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:47 Download gff for
FMO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5770081..5770888 | 293..1088 | 98 | <- | Minus |
| 2L | 5770951..5771212 | 33..292 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:28 Download gff for
FMO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5770081..5770888 | 293..1088 | 98 | <- | Minus |
| arm_2L | 5770951..5771212 | 33..292 | 98 | | Minus |
