Clone FMO04744 Report

Search the DGRC for FMO04744

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:47
Well:44
Vector:pMK33-CFH-BD
Associated Gene/Transcriptave-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04744.5prime Sequence

371 bp (371 high quality bases) assembled on 2008-08-08

> FMO04744.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGGTGAAGAAACT
ATTAACTCAACGCAAAACAAAACCAGAACGAAAACTACGCGACCGAAGGC
AGTGTACCTGTGGACAGTTAGCGATGTGCTCAAGTGGTATCGCCGCCACT
GCGGTGAATACACCCAGTATGAGCAGCTCTTCGCCCAGCACGATATAACC
GGAAGGGCTCTACTCCGGATCACAGACTCCTCACTGCAAAGAATGGGCGT
GACGGACAACCGGGATCGGGAAGCCATTTGGCGGGAGATCGTTAAGCAGC
GACTGAAGACGGATATCATGGAAATCCGGGATATGGAAAGGCTCAATATT
TACGCAAGCTTTCTAGACCAT

FMO04744.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
ave-RA 546 CG30476-RA 70..387 36..353 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14752943..14753110 186..353 840 100 Plus
2R 25286936 2R 14752590..14752742 36..188 765 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:03 has no hits.

FMO04744.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:44 Download gff for FMO04744.5prime
Subject Subject Range Query Range Percent Splice Strand
ave-RA 58..387 23..353 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:15 Download gff for FMO04744.5prime
Subject Subject Range Query Range Percent Splice Strand
ave-RA 53..382 23..353 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:41 Download gff for FMO04744.5prime
Subject Subject Range Query Range Percent Splice Strand
ave-RA 58..387 23..353 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:41 Download gff for FMO04744.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14752578..14752742 23..188 96 -> Plus
2R 14752946..14753110 189..353 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:44 Download gff for FMO04744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10640083..10640247 23..188 96 -> Plus
arm_2R 10640451..10640615 189..353 100   Plus