FMO04745.5prime Sequence
603 bp (603 high quality bases) assembled on 2008-08-08
> FMO04745.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATCGGCA
GGCGAAATTCCTAATCTTGTGCCTCTTTGTGGGCCTCTTCTCCGCGAATT
TGTGCGAAGAAGTGACCACACCGGCTCCAGCGGACACCACCACCCAGGAA
TCCAAGAACACCACCACTCCGCCGGACACCACCACTACTGTGACGCCACC
GTCGACCTCAACCACGAGCACCACAACTGAAAAGACCACGACGACGCCAC
CAATTACCACATCGACTGAGAAGACCACAACTTCCACTACTCCAGCCAGC
ACCACCAGCAGCACCACTCCGGCCAGCACCACCAGCAGCACCACTCCGGC
AACGACCACCACCACGCCTGGAACTACATCTACGACCACTCCGTCTCCGA
ACTCGACCACAACTACGCCGCCGCCACACACATCAACCACTCCGGCGCCG
AAGCCCGTGCCGTGCGGTCATTTCGATGGATCCTCGTTCATTGGCGGCAT
TGTGCTGACTCTGGGCCTGCTCGCTATCGGCTTAGTGGCCTACAAGTTCT
ACAAGGCCCGCAACGAGCGCAACTACCACACCCTTGCAAGCTTTCTAGAC
CAT
FMO04745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-RE | 2164 | CG16707-RE | 122..667 | 40..585 | 2730 | 100 | Plus |
| vsg-RB | 2164 | CG16707-RB | 122..667 | 40..585 | 2730 | 100 | Plus |
| vsg-RA | 2270 | CG16707-RA | 228..773 | 40..585 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9715745..9716219 | 111..585 | 2375 | 100 | Plus |
| 3L | 28110227 | 3L | 9714551..9714623 | 40..112 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:20 has no hits.
FMO04745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:41 Download gff for
FMO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RA | 228..778 | 40..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:41 Download gff for
FMO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RA | 232..782 | 40..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:23 Download gff for
FMO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RA | 228..778 | 40..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:23 Download gff for
FMO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9714551..9714623 | 40..112 | 100 | -> | Plus |
| 3L | 9715747..9716224 | 113..591 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:41 Download gff for
FMO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9707651..9707723 | 40..112 | 100 | -> | Plus |
| arm_3L | 9708847..9709324 | 113..591 | 99 | | Plus |
