FMO04746.5prime Sequence
827 bp (643 high quality bases) assembled on 2008-08-08
> FMO04746.5prime
ACTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGATCAGGA
TCACTTAAAGAATGCTAAAAACGCCACGCGGAGAGTTGGTCGTTTGCGGT
CGCTGGGAATCGTTACAGTCGGAGGAGCTGCCTTGGTGGCGGGCATTACG
GCATACAAGAACCAGGACCAGTTGTTCCGGACCTTCGTGATGCCAGCGGT
GCGACTTCTTCCGGCGGAAGCCAGCCATCAACTGGCCGTGCTGGCGTGCA
AGTACCGCCTGTGCCCGGTTTCACAGTACCATGATGACCAGAACTTGCAC
ACGTCGTTCTTTGGCCGGATGCTTAGCAATCCCATTGGCATTGCAGCGGG
ATTCGATAAGAACGCGGAGGCGGTGGACGGCCTGCAGGATCTAGGATTCG
GATTTATAGAGGTGGGCACAGTTACCCCGGCGGCTCAGGAGGGCAATCCC
AAGCCGAGAGTATTCCGGTTGACCGAGGACAAGGCCATCATTAATCGGTA
CGGATTTAATAGCGACGGGCATCAGGCCGTGCTCCCAACGGCTGCGCTTG
CTCCGCAAAAAGGAGAACCTCCAATGGAGTTGTGGGCGTGATTCTGGGCC
CGGAACAAGACCACCATGAGCCCGATAGCGGATTATGTACAAGGTGTTCG
GGTTTTTGGTCCCGTAACAAACTACCTGGTCATTATGGTGAGCATCCGAA
CACAGGCCTGCCTGATATGCTAGTAAGGAAACTTAAAAACTTCCTGCCTT
GGCAACACCACACCATTCATCTGCTATAACACAATGGCCTATCTCTTTGA
ACTCTCCCGGATTCTTTTCTGGACAAC
FMO04746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1472 | CG9741-RD | 126..814 | 33..720 | 3115 | 97.3 | Plus |
| Dhod-RA | 1355 | CG9741-RA | 9..697 | 33..720 | 3115 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8652079..8652682 | 694..88 | 2750 | 98 | Minus |
| 3R | 32079331 | 3R | 8652736..8652791 | 88..33 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:05 has no hits.
FMO04746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:12 Download gff for
FMO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 7..677 | 30..703 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:05 Download gff for
FMO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 478..1148 | 30..703 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:23 Download gff for
FMO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 7..677 | 30..703 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:23 Download gff for
FMO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8652069..8652682 | 88..703 | 97 | <- | Minus |
| 3R | 8652737..8652793 | 30..87 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:12 Download gff for
FMO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4477791..4478404 | 88..703 | 97 | <- | Minus |
| arm_3R | 4478459..4478515 | 30..87 | 96 | | Minus |
