FMO04749.5prime Sequence
1007 bp (888 high quality bases) assembled on 2008-08-08
> FMO04749.5prime
TCGTATAGCATACCTTATACGAATTTATCAGTCGACATGGGTCTCATGCG
CACTTTGTGCTGCTGCTTCGGTGCAGGGCAGAGTAATCAGTCTTCGGGCG
CAAGTCCAGCTTATAAGGCGTGTCCGGACGAGGAGCCTTTGGAGGAGTTG
GTCACATATCCAGAAAGAGCGGATCAGTCTCCTAAGAATGAGATCGAACA
ATCCCTGGCCGCCGCCATCTCAGACCGTGCTACGGATGAGGTGCTGGAGG
CCCTGACCCGCTACCGCCGTGGCATGGGCATCGCGGAATCGCCATCGGTG
CTGCTAGACGAACCGCAGACGCCGGACATCGTGCGCAGTCGCTCCAGTCA
TGATGCGGATGGTTTAATCATACGACCGGGTGGACGAGGCTCGATATTGC
CCAAACTGGGCTTGGAATCGCCCACTGCCACACCGCATCTGCCCACCAAG
CGACGCAGTCTGGCAAAGAAAGTGCGTCCCCAGTCCGTGGTGGAGAATCT
CAGCCTGGGCCACTTCCCTGACCTCCTGGAGTCACCCTCCTCGCACCGAT
CTAACTCCCAGTTGTCCGCCCGTGCAGCTGCAGGTGCCGCCGCCTTGGTG
GGAGCCGCCAATATGACCGACAGCATCGCTGTGGACGACGGAGGAGTGGG
TGAGTGTTGCGACTCCATCACCGAGCTGCCCAGCGCCTCGTTCCAGCTCC
AGCATCTGGTCAAAGGACGTCCGAAGCGGGCCAAAACGCGTGCACCCACT
CGGCCGTTGGTCACCACCGAGTGCGCCGGGGGCAGCAGGAAATTGGCGAA
TGTTTGGAACACTTCTTCCGGCCGGTTCTGTACCCCCACTACCCTGACTC
CCCTAGTTTCTCCACGTCAGAGGAATGCAGCTCCTTGTCGTTTGTGGACA
GTCCCCACGATGAGCGCGATGGGAATGGTACATATGATCCTCCCGAGGAG
ACAACTCCCATTTCTGGAAGACGCCGACCCATTAATTTGGAACCGCCGTC
CCCATTT
FMO04749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-RA | 3034 | CG1399-RA | 145..1100 | 37..991 | 4380 | 97.8 | Plus |
| CG1399-RG | 5298 | CG1399-RG | 3231..4034 | 189..991 | 3635 | 97.5 | Plus |
| CG1399-RC | 5968 | CG1399-RC | 3231..4034 | 189..991 | 3635 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7679365..7679930 | 991..427 | 2180 | 95.4 | Minus |
| 2R | 25286936 | 2R | 7681307..7681470 | 352..189 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 7681541..7681692 | 188..37 | 745 | 99.3 | Minus |
| 2R | 25286936 | 2R | 7680924..7680999 | 427..352 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:51 has no hits.
FMO04749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:11 Download gff for
FMO04749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 142..1105 | 34..997 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:17 Download gff for
FMO04749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 140..1103 | 34..997 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:07 Download gff for
FMO04749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 142..1105 | 34..997 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:07 Download gff for
FMO04749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7679349..7679930 | 427..1007 | 95 | <- | Minus |
| 2R | 7680925..7680999 | 352..426 | 100 | <- | Minus |
| 2R | 7681308..7681470 | 189..351 | 100 | <- | Minus |
| 2R | 7681541..7681695 | 34..188 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:11 Download gff for
FMO04749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3566854..3567435 | 427..1007 | 95 | <- | Minus |
| arm_2R | 3568430..3568504 | 352..426 | 100 | <- | Minus |
| arm_2R | 3568813..3568975 | 189..351 | 100 | <- | Minus |
| arm_2R | 3569046..3569200 | 34..188 | 98 | | Minus |
