FMO04753.5prime Sequence
1193 bp (1052 high quality bases) assembled on 2008-08-08
> FMO04753.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCAGCCGTGA
AAATAATAATGAGTACCGAAACGTCGGCGAGCGAGACAACACCGCTGCGG
CGGTCGGAAAACGAAACACCTGACCATAAAGAACTGGCCCAAAGTAACAG
CAACAGTCGACAAACAACAGTTAATAGCAACAACAATAACTACAGTAACT
CGGTGCAAGTGCGTCTGCAGGAACAGGACAGAGATAGCGACAGCGAGCAA
CAACAACATACTGCCACCATCACCATGGATACCAACAAAAGAATCCTCTG
CCGCGTGGGCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATAC
TGCTGTTTTTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGAT
GACGAGTCACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGAT
GCTATACTTCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGG
AGGTCATCATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACC
AGTCGAAGGTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGA
GTGCTACAAGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGC
TGACCACGGATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTC
ATCGCGGTGTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGC
GATCAATGCGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGAT
CGTCGGCGCGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCAC
TCCAGCTTCACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGC
TCGCATGACCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCC
TGTTCATCATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGACTACA
GCACCACTGGTTCGATGTGCTGCAGATCGCTTATGCTCCATAGCGCACTG
GTCGTGACTACTATGTCTCGACTTGTTCAAGCCAACCGAGCCTATTGGCG
CGTAAGGGCAGACTGAATGCATCGCCGTCAGCCAACGAATTACCTACAAG
CCAAGCTTCTAGAACATCTTTGGGCGCGCGGCCAGGTAGGTGT
FMO04753.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun-RB | 2026 | CG8804-RB | 383..1492 | 38..1127 | 5010 | 97.8 | Plus |
| wun-RC | 1563 | CG8804-RC | 383..1409 | 38..1057 | 4955 | 99.2 | Plus |
| wun-RA | 1626 | CG8804-RA | 1..1092 | 56..1127 | 4920 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9409213..9409510 | 335..38 | 1490 | 100 | Minus |
| 2R | 25286936 | 2R | 9403705..9403926 | 708..487 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 9402656..9402836 | 886..706 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 9404307..9404459 | 487..335 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 9402448..9402586 | 1022..886 | 580 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:59 has no hits.
FMO04753.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:41 Download gff for
FMO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 377..1435 | 30..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:49 Download gff for
FMO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 374..1432 | 30..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:35 Download gff for
FMO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 377..1435 | 30..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:35 Download gff for
FMO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9409213..9409510 | 36..335 | 99 | <- | Minus |
| 2R | 9402409..9402585 | 887..1056 | 95 | <- | Minus |
| 2R | 9402656..9402835 | 707..886 | 100 | <- | Minus |
| 2R | 9403707..9403925 | 488..706 | 100 | <- | Minus |
| 2R | 9404307..9404458 | 336..487 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:41 Download gff for
FMO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5289914..5290090 | 887..1056 | 95 | <- | Minus |
| arm_2R | 5290161..5290340 | 707..886 | 100 | <- | Minus |
| arm_2R | 5291212..5291430 | 488..706 | 100 | <- | Minus |
| arm_2R | 5291812..5291963 | 336..487 | 100 | <- | Minus |
| arm_2R | 5296718..5297015 | 36..335 | 99 | <- | Minus |
