FMO04756.5prime Sequence
1230 bp (1030 high quality bases) assembled on 2008-08-08
> FMO04756.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACACTGG
AATCTCCTTAAACGAGCGCTTTACGCAGATGCAGTCAAAGCAGCCGCCAC
AGGGACGCGGTCGCAGCCGCTCCAGGAGCAGGAGTCGCCGCATTGTGAGC
AGCGGAGCCGGAAATCAAGGAATGTCCGCGGTCAACTCTAGGCTGCTGAA
TGAATTCAAAAGGCTCCACACCGTTCAGACGGCCCTCAAACTGAAGCGCA
GAAGCTTACGGACCACCGCAGTCAGCGGTCGTGGACCACGCGTCGCCGGC
GTCAAGTCGCTGCGACTGGCGCCCAACGGGAAGCCCATACGGTCCAACAA
CGTGACCAGGGTAGCAACGATGCGTGCCGATCTAGTGGCAAGCGGCAATG
CCGCACGCAATCGCCGCAGCGGCAGCAGCATGCGCAATGTCCCCGCCACT
AACGGTGGTGGAGGCGGACTTCGGCAGCGGCTAGGACAGCGCCGCCCTTC
TGTGGGCGGTGCCGCCGAGCGCGTTGAGCGTCGTCAGCGACAGCAGCAGC
AAGCCCCACGAGGACGTTCCCGCTCTCAGTCCCGTTCGCGCCACCCGCAA
ATACAGCGTGTGGACAGAGCACGTTCCCAAAGCCGTGGACGCAGCATTGG
GCGTTCCCAGAGCCGCAATCGCGATCGCTCCGCCCAGGGCCGAGTTCCAG
TGAAACAGCGGCTTTCAGTCAAGCACCGCCTTGGCGTGCGAACCGGCCAG
AGAAACAACCAGGCCAAGATCCCACCGCAGCGCCGGGCACCAAGCCAAAT
TCGAGGTGTGGCAGGCGGACGGGTCGAGAAGCGTCGTAGTGCTCATATTT
CCCAAAAGAAGGTAGTTTCCGCCTCGATTGCCGGACGTCAAGGACGACCA
CGTAGAAGATCTGTTGCAAGAAACGCTGCTTCTAGCAGTGGGGCAGTTAA
CAATTTCTGCTTCTGCTCGTCGCTCACGCTCGCGCAATCGTGCTGCCGCC
GTCGCTGCTGCCGCTATCGCGGCTACTGTTCAGGCTGTCTAATCCTCGCC
AAAAACGCGGACGCATTGCAGGGCTGCAAGGCCAGATCATAAGAATTGGT
AAGCTGACAAAACCGCGAGTTCAAGGGAACAACGGTGTTCAACGTGCCCG
CAGCCACCGGTTCCACGGAACGAGCTGATCGTAAGCTTACGGCTACCAAG
CGCCTCCTAGTTGGGCGGAGATCTTGGCAC
FMO04756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-RE | 1966 | CG9775-RE | 401..1538 | 39..1168 | 5125 | 97.2 | Plus |
| CG9775-RC | 1740 | CG9775-RC | 175..1312 | 39..1168 | 5125 | 97.2 | Plus |
| CG9775-RA | 1930 | CG9775-RA | 365..1502 | 39..1168 | 5125 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4639018..4639557 | 908..369 | 2670 | 99.6 | Minus |
| 3R | 32079331 | 3R | 4640013..4640223 | 249..39 | 1040 | 99.5 | Minus |
| 3R | 32079331 | 3R | 4638625..4638841 | 1118..907 | 645 | 91.7 | Minus |
| 3R | 32079331 | 3R | 4639633..4639752 | 369..250 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:50 has no hits.
FMO04756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:49 Download gff for
FMO04756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RA | 358..1464 | 32..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:32 Download gff for
FMO04756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RC | 127..1233 | 32..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:49 Download gff for
FMO04756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RA | 358..1464 | 32..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:49 Download gff for
FMO04756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4639018..4639557 | 369..908 | 99 | <- | Minus |
| 3R | 4639634..4639752 | 250..368 | 100 | <- | Minus |
| 3R | 4640013..4640227 | 32..249 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:49 Download gff for
FMO04756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 464740..465279 | 369..908 | 99 | <- | Minus |
| arm_3R | 465356..465474 | 250..368 | 100 | <- | Minus |
| arm_3R | 465735..465949 | 32..249 | 97 | | Minus |
