FMO04759.5prime Sequence
549 bp (549 high quality bases) assembled on 2008-08-08
> FMO04759.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATGACTCG
GAATTCATGTTCAACGAGAAGCAATCGATCCGGGACTCCGGGCGCACCCT
CAAGCGCTACGGGAGCACCTGCTGCAACAGCCTCCGGAACAATGAGACCC
TCATCCGGCACATCGTCGAGAAGACGGACACGCTGCAGGGCATCGCCCTC
AAGTACGGCTGCACGACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGC
CTCGGACAGCCTGTTCCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGA
ACTCACCGTACTATCCCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGAC
GCCGTGCTGGCCACGCCACCGGGCACTCCGGATGCCAATGGACAGCGGGA
GGCGCACAACAATGCCAATAATCTGAGCCAGAGCAACAAGAGCTTCATGA
AGAGCAACGACATCAGCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGC
AGCAGCTGCAACACAAGTGGCACCGGCCCCATTTCCGGAGGATCGCGTT
FMO04759.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12207-RG | 2535 | CG12207-RG | 707..1221 | 35..549 | 2575 | 100 | Plus |
| CG12207-RF | 2113 | CG12207-RF | 285..799 | 35..549 | 2575 | 100 | Plus |
| CG12207-RE | 1927 | CG12207-RE | 99..613 | 35..549 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14300419..14300753 | 215..549 | 1675 | 100 | Plus |
| 3R | 32079331 | 3R | 14298807..14298987 | 35..215 | 905 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6925 | 406..535 | 218 | 63.1 | Plus |
FMO04759.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:34 Download gff for
FMO04759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12207-RD | 226..744 | 30..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:30 Download gff for
FMO04759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12207-RB | 483..1001 | 30..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:07 Download gff for
FMO04759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12207-RE | 95..613 | 30..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:07 Download gff for
FMO04759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14298811..14298987 | 39..215 | 100 | -> | Plus |
| 3R | 14300420..14300753 | 216..549 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:34 Download gff for
FMO04759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10124533..10124709 | 39..215 | 100 | -> | Plus |
| arm_3R | 10126142..10126475 | 216..549 | 100 | | Plus |
