FMO04760.5prime Sequence
665 bp (665 high quality bases) assembled on 2008-08-08
> FMO04760.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGTCCCCGA
TCTAAGGAGATTAGAGTGTGGCTGGGAGAGCTCGACCTTAGTTCCACAAG
TGACTGCACCACCTACAATTATGAACGGGTTTGCGCTCCGCCCGTGGAGG
AGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTTTAT
CCCGGGTATGATATTGCCCTGATAAAACTAAACAAGAAAGTGGTCTTTAA
AGATCACATACGACCCATATGCCTGCCCCTGACCGACGAACTCTTGGCGT
TTACCTTGCAGCTGGGACAACGCTTCATGGCGGTGGGCTGGGGAAAAACG
GAGAGTCTACGCTATGCCAACAGTACAATGGAGGTGGATATAAGAACTGA
GAAGTGCACCGACGGCAGGGATACTTCGTTCCTCTGCGCCAGTGGAGATT
ATGTGGACACATGCAATGGGGACTCCGGTGGACCGCTCTTATGGAAGACC
ACGTTGTTTGGCAAGGATCGAGCCGTACAATTTGGTGTGGTCAGCACTGG
AAGCCAAAACTGCGGTGCTGGTCACAAGGCCTACTACATGGATGTACCCA
CCTATATGCCCTGGATACTTGAAAAGATGGCAGAATTCTCGGATGTTGCA
AGCTTTCTAGACCAT
FMO04760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30002-RB | 1572 | CG30002-RB | 348..956 | 39..647 | 3045 | 100 | Plus |
| CG1773-RA | 1123 | CG1773-RA | 350..955 | 39..644 | 2400 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9705135..9705531 | 251..647 | 1985 | 100 | Plus |
| 2R | 25286936 | 2R | 9707019..9707412 | 251..644 | 1475 | 91.6 | Plus |
| 2R | 25286936 | 2R | 9704871..9705064 | 59..252 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 9706755..9706948 | 59..252 | 835 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:30 has no hits.
FMO04760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:01 Download gff for
FMO04760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30002-RB | 343..960 | 34..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:16 Download gff for
FMO04760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30002-RA | 400..1017 | 34..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:51 Download gff for
FMO04760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30002-RB | 343..960 | 34..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:51 Download gff for
FMO04760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9704782..9704806 | 34..58 | 92 | -> | Plus |
| 2R | 9704871..9705064 | 59..252 | 100 | -> | Plus |
| 2R | 9705137..9705535 | 253..652 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:01 Download gff for
FMO04760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5592376..5592569 | 59..252 | 100 | -> | Plus |
| arm_2R | 5592287..5592311 | 34..58 | 92 | -> | Plus |
| arm_2R | 5592642..5593040 | 253..652 | 99 | | Plus |
