FMO04762.5prime Sequence
1223 bp (1041 high quality bases) assembled on 2008-08-08
> FMO04762.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGTCGAAAGAG
ATGACGAGTATCTAAAATTTGTGCCCCACACGATGTCGTATCAAGTCGTC
CCGGGATCGGAGTTCCAGTGCAAGAAGGCCAGCTATAGCTCCAGGAAGCT
CTCCACCATCGACGAGCAGGACGACGATGCTGCCAACCGAAGGGGAATGA
TGCACCAGATTCTGGCCACCTGTGCTGTACTCTTACTTTCCGCTGGATGC
GGCATGCCCATTGGATTCTCGGCCATCCTGTTGCCCCAGCTGATGGATAA
CAACTCCACGGAGATACCCATTGATGTAGAGACGGGCTCCTGGATAGCAA
GTGTCCATAGCCTGGCCACACCATTTGGATCCCTGCTGTCGGGACCTCTG
GCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCTCTGTGATTCCCCT
CCTCCTGGGATGGAGCACCTTGGCGATCGCCAAGAGCATCAAGGTGGTGA
TCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAATTCTGGGTGGACCC
GGACAGGTGTACATTGCGGAAACGGCGGAACCCAATCTGCGGAGTCTGCT
GATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATCCTAATGGTCTACT
CCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTGGTGCGCCAACGTG
CTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATACCGGAGACTCCGGC
CTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTGCATGCCCTCTCGT
TCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCTGAATGATATGAAG
CAGAGGCTGGCCAAAGAGCGGGTGACCACCAAGACGAACGAGAACATCTT
CCAGCTGTGCTGCCAGCGCGTGCCATCAAGCCGCTGGTCATTGTGATCGT
GTTCTCGCTGCTGCAGATGTCTCCGGCACGTTCATCGTGATCTTCTATGC
CGTGACATGATCTCGGAGTTCGGAGCGGAGTCGACTCCAAGCAGGCGACC
ATTGCGACGCAGTTGTCGGGTGATCTGCTGCATGGTCTTTCTGCTAATCC
TGATCTTCATCGCCGCCCAGATCACTGATATGTCCGAATCGGCTCCGGCT
TGTTCTGCTGGCTCAGTCATCAATGTCCGAATCTATCACGGAAGGATGCT
GTACGACGCATCTTCTACTGAGC
FMO04762.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 264..1397 | 35..1158 | 5240 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812948..23813507 | 1108..555 | 2365 | 97.3 | Minus |
| 2R | 25286936 | 2R | 23814322..23814535 | 559..346 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 23815442..23815603 | 208..47 | 810 | 100 | Minus |
| 2R | 25286936 | 2R | 23814596..23814736 | 347..207 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:06 has no hits.
FMO04762.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:23 Download gff for
FMO04762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 264..1412 | 35..1171 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:06 Download gff for
FMO04762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 263..1411 | 35..1171 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:26 Download gff for
FMO04762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 264..1412 | 35..1171 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:26 Download gff for
FMO04762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23812879..23813505 | 557..1171 | 96 | <- | Minus |
| 2R | 23814325..23814533 | 348..556 | 100 | <- | Minus |
| 2R | 23814596..23814734 | 209..347 | 100 | <- | Minus |
| 2R | 23815442..23815601 | 49..208 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:23 Download gff for
FMO04762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19702965..19703124 | 49..208 | 100 | <- | Minus |
| arm_2R | 19700402..19701028 | 557..1171 | 96 | <- | Minus |
| arm_2R | 19701848..19702056 | 348..556 | 100 | <- | Minus |
| arm_2R | 19702119..19702257 | 209..347 | 100 | <- | Minus |
