FMO04765.5prime Sequence
1168 bp (1071 high quality bases) assembled on 2008-08-08
> FMO04765.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACCACGAACA
GCAGCTTCTTCGATGAACACATCGCCATGATATACTCCAACCTGATGGAC
CAGTACATGCCCGAGTACTTCAAAAGCTTTGAGTACACGCCATGGGTTTT
CTCCCTGCTGGGATCGGTGGTAATTGGACTGAGTGGCATATTCCCGCTGA
TCATCATTCCCACGGAGGAGAAAATGGCTAAGGAGGGATACAAAGATCCT
GCAGATTCAAAACTCCTGCGAGTGCTTCTGAGTTTCGCGGTCGGCGGTCT
GCTGGGCGATGTGTTCCTTCACCTGTTGCCAGAAGCCTGGGAGGGCGATA
ATCAAGATCCTTCTAGTCACCCATCCCTGCGCTCGGGCCTTTGGGTACTT
TCCGGCATACTGATCTTCACGATCGTGGAGAAAATCTTTTCCGGATATGC
CAGCGCGGACGAGGAGAACCCTCAGCCCAAGTGCGTGGAGATAGCCAACT
GCCTGTTGCGTCGACATGGCGGCCAACTACCAGAGGGCGAAACCTCTGAG
AGTTGTGGCGGCGCCTGCGACATCGAAGATGTAGGTAAAGTCTGTTTCCT
ACGCGAGCAGGAACAGAAGTCAAAGGAAAGGAAGGAACAGCCGAAGAAGG
TGGCTGGTTATCTGAACCTCTTGGCCAACTCAATTGACAATTTCACACAC
GGTCTAGCCGTGGCTGGATCCTTTTTGGTGTCCTTCAGACACGGCATTCT
AGCCACTTTTGCCATATTGCTTCATGAAATTCCGCACGAGGTGGGGGATT
TCGCAATCCTGCTTCGATCCGGATTCAGTCGCTGGGACGCCGCGCGTGCG
CAACTACTCACGGCGGGAGCTGGCCTGCTCGGTGCTCTGGTGGCCATCGG
AGGCTCCGGCGTACGTCGCCATGGAGGCACGTACTTCGTGGATTATGCCG
TTCACGCCGGCGGCTTTCTGCACAATTGCTCTGGTCACAGTATTACCTGA
TCTCTTGAAGGAGGAGGAGCGCAAGAAGTCCATTAAGCAGCTGCTAGCCA
CTGGTATTGGCATTGCGTTAATGCGTGATGAACATGCTATCGAACACGCA
AGCTTTCTAGAAACATCCATTGGCCGGCGGGCAGTATGGTCCTAATAATA
TCCATAATCTAATCAATC
FMO04765.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip99C-RJ | 1638 | CG7816-RJ | 314..1378 | 38..1097 | 5090 | 99 | Plus |
| Zip99C-RI | 1709 | CG7816-RI | 385..1449 | 38..1097 | 5090 | 99 | Plus |
| Zip99C-RH | 1476 | CG7816-RH | 152..1216 | 38..1097 | 5090 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29864413..29864829 | 770..354 | 2085 | 100 | Minus |
| 3R | 32079331 | 3R | 29865057..29865267 | 248..38 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 29864208..29864350 | 913..771 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 29863969..29864137 | 1090..924 | 560 | 95.3 | Minus |
| 3R | 32079331 | 3R | 29864889..29864996 | 356..249 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:40 has no hits.
FMO04765.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:04 Download gff for
FMO04765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7816-RH | 143..1216 | 30..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:28 Download gff for
FMO04765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7816-RG | 206..1279 | 30..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:28 Download gff for
FMO04765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip99C-RH | 143..1216 | 30..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:28 Download gff for
FMO04765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29863961..29864136 | 925..1097 | 94 | <- | Minus |
| 3R | 29864195..29864350 | 771..924 | 98 | <- | Minus |
| 3R | 29864413..29864826 | 357..770 | 100 | <- | Minus |
| 3R | 29864889..29864996 | 249..356 | 100 | <- | Minus |
| 3R | 29865057..29865273 | 32..248 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:04 Download gff for
FMO04765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25689683..25689858 | 925..1097 | 94 | <- | Minus |
| arm_3R | 25689917..25690072 | 771..924 | 98 | <- | Minus |
| arm_3R | 25690135..25690548 | 357..770 | 100 | <- | Minus |
| arm_3R | 25690611..25690718 | 249..356 | 100 | <- | Minus |
| arm_3R | 25690779..25690995 | 32..248 | 98 | <- | Minus |
