FMO04767.5prime Sequence
450 bp (450 high quality bases) assembled on 2008-08-08
> FMO04767.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATGATGC
GGACTACGACAACGACGACGTTGGCGGCGATGACTTCGACGACGTCGACG
AGGACGTGGACGAGGACATTAACCAGGAGGAGGAGGCGGACAACATCGAG
ATCATAGCTCCCGGTGGTGCGGGCGGAGGCGGTGTGCCCAAGTCCAAGCG
CATTACCACAAAGTACATGACGAAATACGAGCGCGCCAGAGTTCTGGGCA
CACGAGCGCTTCAGATCGCCATGTGCGCACCCATCATGGTGGAGCTGGAC
GGGGAAACGGACCCCCTGCAGATCGCCATGAAAGAGCTGAAACAAAAGAA
AATTCCCATCATCATCCGCCGATACCTGCCGGATCACTCCTACGAGGACT
GGAGCATCGACGAGCTCATCATGGTGGACAACGCAAGCTTTCTAGACCAT
FMO04767.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII18-RA | 541 | CG1163-RA | 93..485 | 40..432 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5371978..5372341 | 69..432 | 1820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:36 has no hits.
FMO04767.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:30 Download gff for
FMO04767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII18-RA | 88..490 | 32..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:50 Download gff for
FMO04767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII18-RA | 85..487 | 32..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:05 Download gff for
FMO04767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII18-RA | 88..490 | 32..439 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:05 Download gff for
FMO04767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5371882..5371915 | 32..68 | 91 | -> | Plus |
| 3R | 5371978..5372346 | 69..439 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:30 Download gff for
FMO04767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1197604..1197637 | 32..68 | 91 | -> | Plus |
| arm_3R | 1197700..1198068 | 69..439 | 99 | | Plus |
