FMO04768.5prime Sequence
823 bp (823 high quality bases) assembled on 2008-08-08
> FMO04768.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATTTCGCGG
GCAAAGTGGTCCTTATTACGGGAGCAAGCTCCGGAATCGGAGCTGCAACC
GCCATTAAGTTTGCCAAGTACGGCGCCTGTCTGGCTCTCAATGGACGCAA
TGTGGAGAACCTGAAGAAGGTAGCCGCTGAGTGCAGCAAGGTGAGCCAAT
CACAGCCGGCCCTGGTGGTGGGCGACATTGCCAAGGAGGCGGACACCCAG
AGGATTTGGTCGGAAACCCTGCAGCAGTACGGCAAATTGGATGTGCTGGT
CAACAATGCCGGAATCATCGAGACGGGCACCATCGAGACGACTAGCCTGG
AGCAGTACGACCGCGTCATGAACACCAACCTGAGGGCAATCTACCACCTT
ACTATGCTGGCCACCCCCGAGCTGGTCAAGACCAAGGGCAACATCGTGAA
CGTGTCCAGTGTCAATGGGATTCGCTCCTTCCCTGGCGTTCTGGCCTACA
ACATATCCAAAATGGGAGTGGATCAGTTCACCCGCTGTGTGGCGTTGGAG
CTGGCTGCCAAGGGTGTGCGCGTGAACTGCGTGAATCCCGGCGTGACGGT
CACCAATCTGCATGCCCGCGGCGGCATGGATGCGGAGACGTACAAAAAGT
TCCTGGAACACTCCAAGACCACCCATGCCTTGGGTCGTCCTGGAGATGTC
AAGGAGGTGGCTGCGGCCATTGCCTTCCTGGCCAGCGATGAGGCCAGCTT
CAGCACTGGAGTCAGCCTGCCGGTGGACGGCGGTCGCCATGCCATGTGCC
CACGCGCAAGCTTTCTAGACCAT
FMO04768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31548-RA | 952 | CG31548-RA | 47..815 | 37..805 | 3845 | 100 | Plus |
| CG12171-RA | 1014 | CG12171-RA | 324..832 | 293..801 | 985 | 79.8 | Plus |
| CG31549-RB | 991 | CG31549-RB | 321..832 | 290..801 | 880 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5636038..5636806 | 805..37 | 3845 | 100 | Minus |
| 3R | 32079331 | 3R | 5633950..5634458 | 293..801 | 985 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:55 has no hits.
FMO04768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:49 Download gff for
FMO04768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31548-RA | 40..818 | 28..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:55 Download gff for
FMO04768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31548-RA | 33..811 | 28..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:27 Download gff for
FMO04768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31548-RA | 40..818 | 28..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:27 Download gff for
FMO04768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5636035..5636813 | 28..809 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:49 Download gff for
FMO04768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1461757..1462535 | 28..809 | 99 | | Minus |
